Detailed information on CNT30148621


BLAST search results

BLAST vs Swiss-Prot:
sp|P03938|YCF68_MAIZE, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272810Brachypodium distachyonChenopodium quinoa27.3228.4993.4106forward
CNT30708350Brachypodium distachyonGlycine max70.8834.4288275forward
CNT30556102Brachypodium distachyonOryza glaberrima69.8544.2895.94271forward
CNT30610339Brachypodium distachyonGossypium raimondii37.8944.1487.07147reverse complement
CNT3057391Brachypodium distachyonAmborella trichopoda43.563.3584.02169forward
CNT30116753Brachypodium distachyonOryza nivara29.928.93100116forward

Expression of CNT30148621

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GKSLGNNSDGQKKEGVKRPSWPNPRHSKILFQTCSAPI*

>peptide 2 (58 aa)
VASPWEITPMGRKRKALRDPPGPTLDTLRSFFKPALLPFKEKEFHVLPESKGGLGKCY*

Sequence

>CNT30148621
GTGGCAAGTCCTTGGGAAATAACTCCGATGGGCAGAAAAAGGAAGGCGTTAAGAGACCCTCCTGGCCCAACCCTAGACACTCTAAGATCCTTTTTCAAAC
CTGCTCTGCTCCCATTTAAGGAAAAAGAATTTCACGTTCTTCCTGAAAGCAAGGGAGGATTAGGAAAGTGCTATTGATTGCTGCTTTCTCCAGACCGCCG
GGAAAAGCATGAAAAAAAGGCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGGGGATCTCGTAGTTCTTGGTCTGTGAAGATGCGTTGTTA
GGTGCTCCATTTTCCCATTGAGGACGGACCTCAACCTGTGGTCGAGAGATAGCTCTCCATACACTGATAAGGGGTGTATGGATTCTCG