Detailed information on CNT30148465


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 3e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695265Brachypodium distachyonOryza sativa46.7852.3886.23363forward
CNT30677834Brachypodium distachyonSetaria viridis18.329.9693.66142forward
CNT30710271Brachypodium distachyonGlycine max19.5930.5280.92152forward
CNT30393705Brachypodium distachyonTriticum turgidum46.7839.8992.29363forward
CNT30665496Brachypodium distachyonTriticum dicoccoides46.7852.0192.56363forward
CNT30596768Brachypodium distachyonOryza meridionalis46.7846.3685.95363forward
CNT30356415Brachypodium distachyonLactuca sativa11.0824.7886.0586forward
CNT30577551Brachypodium distachyonOryza barthii46.7842.3190.08363forward
CNT30579413Brachypodium distachyonEchinochloa crusgalli46.7839.1287.88363forward

Expression of CNT30148465

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MGLRGRAGAGRSRRGLGWRREPPGFLGRRRGGRLGRGRWGKGRRGSGVWGRRKGTGWRRGGGGWRRRLAWPWPWRELA*

>peptide 2 (36 aa)
MLLKFCPTPCLPAFTFSGYTPSLGWRYCTSPLGKTR*

Sequence

>CNT30148465
TCATCGCTGAATCCCCATCGTTGAAACTTTAAAATTACAAGTAGTCCATCGATCGATCATCATCATCCCCGCACCCCATCAACTGCTACGTACGGATGAA
CTAATTAACACACGCATGCATGCAAATATACGATGCTTAATTAATTAACACCGATCGATCAGACGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCAAT
CGGGCTAACATTCTTCCCGATGCTCCTGAAATTCTGCCCGACGCCCTGCCTGCCGGCGTTCACCTTCTCCGGGTACACCCCGTCCTTGGGGTGGAGGTAC
TGCACCTCGCCGCTGGGGAAGACGCGGTAGAACTGGTAGGCGATCTTGTACTTGGAGCGGAGCCGGTTGCCGAGCGCCAGCTTGAGGAGGTTGGGCCCCT
CACGCATGATGGCGGCGCCGCCCGTCGGCATCTCGAACACCTGCTCCTTGGGCGACGTCCACGTGATGACGTAGAATTCCTCGACCTGGGCTTTGCGGAG
GAGCCCGCCCGTGCTGCCGCCGAAGATTGGGGATGGGGTTGAGGGGTCGAGCTGGGGCGGGACGAAGCCGGCGGGGGCTGGGGTGGCGACGGGAGCCGCC
GGGGTTTCTGGGGCGGCGGCGTGGAGGGCGGTTGGGGCGCGGGAGGTGGGGGAAGGGAAGGCGAGGGAGCGGGGTTTGGGGGAGGAGGAAGGGGACCGGG
TGGCGGCGAGGAGGTGGCGGGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGCGGGAGCTAGCTTAGCGAGAGC