« Back to Brachypodium distachyon search


Detailed information on CNT30148402


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Brachypodium distachyonOryza sativa28.1131.6586.96138forward
CNT30675375Brachypodium distachyonSetaria viridis25.4644.3397.6125forward
CNT30523795Brachypodium distachyonSetaria italica54.9943.6288.89270forward
CNT30315797Brachypodium distachyonCorylus avellana20.9815.5886.41103forward
CNT30698329Brachypodium distachyonQuercus lobata51.7353.8183.46254forward
CNT30376827Brachypodium distachyonArabidopsis thaliana26.6855.5183.97131forward
CNT3069241Brachypodium distachyonQuercus suber26.6829.7784.73131forward
CNT30200358Brachypodium distachyonPisum sativum27.922.0382.48137forward
CNT30709007Brachypodium distachyonGlycine max24.0349.5885.59118forward
CNT3048083Brachypodium distachyonPrunus dulcis27.919.5284.67137forward
CNT30178172Brachypodium distachyonSecale cereale26.2723.596.9129forward
CNT30304662Brachypodium distachyonTriticum aestivum31.7730.2994.23156forward
CNT30219843Brachypodium distachyonHordeum vulgare20.9817.9499.03103forward
CNT30398097Brachypodium distachyonTriticum turgidum26.6817.1293.13131forward
CNT30565750Brachypodium distachyonActinidia chinensis24.2410.8385.71119forward
CNT30591253Brachypodium distachyonMusa acuminata27.0942.6390.98133forward
CNT30508427Brachypodium distachyonSolanum lycopersicum21.7930.8483.18107forward
CNT30443502Brachypodium distachyonAegilops tauschii34.0126.9892.22167forward
CNT30240523Brachypodium distachyonAvena sativa51.1240.192.03251forward
CNT30657055Brachypodium distachyonTriticum dicoccoides25.0523.5295.12123forward
CNT30259840Brachypodium distachyonBrassica rapa25.8743.9484.25127forward
CNT30474628Brachypodium distachyonSaccharum spontaneum34.0114.0594.61167forward
CNT30141359Brachypodium distachyonLolium perenne31.5717.896.13155forward
CNT306284Brachypodium distachyonZea mays18.9443.4693.5593forward
CNT30606039Brachypodium distachyonGossypium raimondii25.6626.5884.13126forward
CNT30686633Brachypodium distachyonTriticum urartu18.1332.1310089reverse complement
CNT30719922Brachypodium distachyonTriticum spelta51.9343.1591.37255forward
CNT30368649Brachypodium distachyonSorghum bicolor26.0730.4886.72128forward
CNT30622400Brachypodium distachyonCajanus cajan34.0118.2586.83167forward
CNT30596421Brachypodium distachyonOryza meridionalis58.0440.690.53285forward
CNT30358587Brachypodium distachyonLactuca sativa20.5718.484.16101forward
CNT30154413Brachypodium distachyonPrunus persica26.0733.0783.59128forward
CNT30329187Brachypodium distachyonDioscorea rotundata30.7538.9282.78151forward
CNT3099660Brachypodium distachyonOryza rufipogon20.7722.52100102forward
CNT30583665Brachypodium distachyonEchinochloa crusgalli27.4915.2295.56135forward
CNT30114434Brachypodium distachyonEutrema salsugineum32.5940.282.5160forward

Expression of CNT30148402

Peptides detected in this lncRNA

>peptide 1 (31 aa)
YQIVFDICLLDRKQNTESLIPTPILLHINQG*

>peptide 2 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 3 (57 aa)
PNSLRHMFAGSQTEYRKSYTNPYSVTHKPGLTKQLGTKPGRGSTNLAGDELIPIPTG*

Sequence

>CNT30148402
TACCAAATAGTCTTCGACATATGTTTGCTGGATCGCAAACAGAATACAGAAAGTCTTATACCAACCCCTATTCTGTTACACATAAACCAGGGCTAACAAA
GCAATTAGGTACTAAACCGGGAAGGGGATCAACAAACTTGGCCGGTGACGAATTGATCCCAATCCCGACTGGCTAAGGAGATCTTGGGCGGTGAGAGTAC
TGCTTAAGCACGCTCGCCACGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCG
AAGAGCCCGACGAGGTAGGCTTCCGCCGCCTCCTGGAGCGCCAGCACGGCGTGGCTCTGGAACCGGAGCTTGCGGATCAGGAGCTCCGTGCTCTTCTGGT
ACTTGCGGATCTCACGGAGCGCCACCGTCCCGGGCCTGTAGCGGTGGGGCTTCTTCACTCCGCCGGTCGTCGGCGCAGACTTCCTAGCCGC