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Detailed information on CNT30148380


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4FFN5|PSBC_RANMC, E-value = 5e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Brachypodium distachyonOryza sativa30.0128.9396.81407forward
CNT30673559Brachypodium distachyonSetaria viridis4.7222.5485.9464reverse complement
CNT30533065Brachypodium distachyonEucalyptus grandis13.7224.689.25186forward
CNT30730376Brachypodium distachyonCorchorus capsularis13.4245.6186.81182forward
CNT30402011Brachypodium distachyonBeta vulgaris9.8822.8385.82134forward
CNT30196209Brachypodium distachyonPisum sativum922.888.52122forward
CNT30712184Brachypodium distachyonGlycine max20.5846.593.55279forward
CNT30637537Brachypodium distachyonCapsicum annuum18.8142.4381.96255forward
CNT30300556Brachypodium distachyonTriticum aestivum30.3824.1197.33412forward
CNT30542882Brachypodium distachyonBrassica napus30.4622.8888.62413forward
CNT30236148Brachypodium distachyonBrassica oleracea29.2825.8588.41397forward
CNT30556052Brachypodium distachyonOryza glaberrima12.0965.8685.37164reverse complement
CNT30441515Brachypodium distachyonAegilops tauschii30.3864.0797.09412forward
CNT30714122Brachypodium distachyonMalus domestica golden17.0455.9390.48231forward
CNT30627901Brachypodium distachyonDaucus carota23.8227.6192.57323forward
CNT30684661Brachypodium distachyonTriticum urartu54.2817.3998.78736forward
CNT30720008Brachypodium distachyonTriticum spelta15.5686.8399.53211reverse complement
CNT30362263Brachypodium distachyonSorghum bicolor17.6327.6399.16239forward
CNT30595932Brachypodium distachyonOryza meridionalis26.426.9497.49358forward
CNT30371428Brachypodium distachyonOryza glumipatula12.4627.0498.22169reverse complement
CNT30425595Brachypodium distachyonPapaver somniferum30.4670.689.35413forward
CNT30646085Brachypodium distachyonCannabis sativa11.0634.491.33150reverse complement
CNT30109402Brachypodium distachyonOryza longistaminata30.0130.997.05407forward
CNT30318962Brachypodium distachyonAsparagus officinalis23.8215.4995.36323forward
CNT30100129Brachypodium distachyonOryza rufipogon29.1337.6297.22395forward
CNT30575742Brachypodium distachyonOryza barthii20.6562.597.14280forward
CNT30116897Brachypodium distachyonOryza nivara11.2131.6795.39152forward
CNT30557406Brachypodium distachyonPanicum hallii25.2981.2895.63343forward
CNT30726606Brachypodium distachyonLupinus angustifolius23.8227.491.95323forward

Expression of CNT30148380

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSLVLLHPKRKKTSISKFSSDVAAFFLDVKQCQTKIPNKHKH*

>peptide 2 (52 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSPVGERIRYLPKPVGP*

>peptide 3 (74 aa)
MGSHLNRPIYPPEEKFVWFQTPIQTGGVCHANVPWMIHIFGSGADEHIELSMWLRALTAQAQRRNYQGRALPLS*

>peptide 4 (39 aa)
MGIRVGDLVFISKAGIADLLSVYTVYRNISKKDLHLRCF*

Sequence

>CNT30148380
ATTCTTCTCTTTAATTAATAATTAAAACTTATTACTTACCGCTTTTATTTGGATATGGGGATTAGGGTAGGGGATTTAGTCTTTATTTCAAAAGCGGGTA
TAGCGGATCTTCTATCCGTGTATACAGTATACAGAAATATATCGAAAAAGGATTTGCATCTGAGATGTTTCTAGAGGTTAGTAGATCCTTTTATTTTTAT
ATGGCTGTGTTCTAAATCACGATCGATTCCCTTTTCAAAACCTGCTGCAGCAGCTCGGGCTCTTCCTGCATGCCACAAATGGCCCACAAAAAAGAAGAAT
CCTAGAACAAAATGAGAAGTCGATAACCAACTTCTAGGAGAGACATAATTAACTGCATTGATCTCGGTAGCTACGCCACCCACGGAATTTAAAGAGCCTA
AAGGAGCATGGGTCATATATTCCGCTGAACGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCAAACCGTTGGGCCCCCTTAGAGG
TTCTAACCATGGAGCACGGAGGTCCCAAAAACGCATAGTTTCCCCTCCAAAGATAACCTCTCCCGTTGGGGAACGCATTAGATATTTACCTAAACCTGTG
GGTCCTTGAGCAGATCCCACGAGTGAATAGAAAGTTAGATCTACATGGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGTTTGGTT
TCAAACTCCGATTCAAACAGGAGGAGTATGCCATGCTAATGTGCCTTGGATGATCCACATCTTCGGGTCAGGCGCTGATGAGCACATTGAACTATCCATG
TGGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGCGCGGGCCTCCCAAAGGGAGG
CCTGCTACGCCAAAAGCGAGAAAAACTCCATCCCTTTCCTTTTGACATCCCCATGCCGCCACACCACAGGGGGGGGACATGGGGGCGTCAAAAAAGGGAT
CCTATCACTTATCAACTAATTTGTTCCGACCTAGGATAATAAGCTCATGAGCTTGGTCTTACTTCACCCTAAACGAAAGAAGACTTCCATATCCAAGTTT
AGCTCAGACGTAGCTGCCTTCTTTTTGGACGTGAAGCAGTGTCAAACCAAAATACCCAATAAGCATAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCA
GCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCGCAAGCCTAGCCTTAGGCATCCCCCTCCTTACGGTTAAGGGTAATGACTTCAAA
CATGGCCAGCTCCTATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGATAGTGGAT