« Back to Brachypodium distachyon search


Detailed information on CNT30148362


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523111Brachypodium distachyonSetaria italica11.4720.0888.4295forward
CNT30134231Brachypodium distachyonLolium perenne9.6629.8588.7580forward

Expression of CNT30148362

Peptides detected in this lncRNA

>peptide 1 (65 aa)
GLVRAHGDLGVPGPFHGPLVDVGRPDDHVLVVHDHALGVHVHHESPVLPRLILKATCVETKINLA*

>peptide 2 (50 aa)
GWYAPMAISVSRVPSMDLWLMLADPMITYSSSTIMPLECTYTMNLLFFLD*

>peptide 3 (45 aa)
MQIMPWFSRATGIKYLHKIDTYLDLEVTHENPAKFSSLLLSLLAQ*

>peptide 4 (36 aa)
MNKRLISALTEFESIDRKICTQKVKKIQSLKRSLWQ*

Sequence

>CNT30148362
GGGCTGGTACGCGCCCATGGCGATCTCGGTGTCCCGGGTCCCTTCCATGGACCTCTGGTTGATGTTGGCCGACCCGATGATCACGTACTCGTCGTCCACG
ATCATGCCCTTGGAGTGCACGTACACCATGAATCTCCTGTTCTTCCTCGATTGATCCTGAAAGCCACATGTGTTGAAACAAAAATCAATCTTGCCTGAGG
ATTGCTGGCTGAAAATGGTCCGCTGGATGTGCCAGGAGTTTCCTCGGCTTCGCGGTTGCCGAGGCAGAAGAAGTTGAGTTAAAGGAAGAACCAAGGAAAT
ACTGATTTTCAATATATATGAAGTGTTGGGCTGCTCGGATGGCAGTAACGTAAGCTGTATGTATGCTCGTATCGATTAGTACATTTTTCCCGCAAACAAG
ATTCTGCCAGCATGAACAAAAGGCTTATCTCAGCTTTGACAGAGTTTGAATCAATAGATCGGAAGATCTGCACTCAAAAGGTAAAAAAAATTCAATCGCT
CAAAAGGAGTCTATGGCAATAGACTACTAGCAATCATACCTGAACATCCCATCTTTCTGGATCTCTGTCACTTGCATAGATTTCATCGTCAATAGCTACA
ATCTCAGTTTTTCAGGACATCAAAAGCTGCTGGACCATCAATCTTGGAATGCAAATCATGCCATGGTTCTCTCGGGCCACGGGCATCAAGTACCTGCATA
AAATCGACACATACTTAGACTTGGAAGTGACACATGAAAATCCAGCAAAGTTCAGTTCTTTACTTTTGTCGTTGCTAGCACAGTAAAGATCAGAGATTGT
TCCAAGGCAACAGAAGAGCAATCCTCAC