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Detailed information on CNT30148341


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Brachypodium distachyonSetaria viridis70.3151.8991.26206forward
CNT30522442Brachypodium distachyonSetaria italica47.4417.0693.53139forward
CNT30641545Brachypodium distachyonNymphaea colorata32.0811.0686.1794forward
CNT30525128Brachypodium distachyonPhaseolus vulgaris32.0821.8182.9894forward
CNT30709011Brachypodium distachyonGlycine max27.38.818580forward
CNT30188078Brachypodium distachyonSecale cereale36.5211.0494.39107forward
CNT30298665Brachypodium distachyonTriticum aestivum69.6231.5396.57204forward
CNT30393886Brachypodium distachyonTriticum turgidum42.6633.4297.6125forward
CNT30664845Brachypodium distachyonTriticum dicoccoides69.6234.0696.08204forward
CNT30137478Brachypodium distachyonLolium perenne58.767.7288.37172reverse complement
CNT309319Brachypodium distachyonZea mays68.943792.57202forward
CNT30684883Brachypodium distachyonTriticum urartu69.6233.8996.57204forward
CNT30349302Brachypodium distachyonEragrostis tef68.9436.492.08202forward
CNT30579037Brachypodium distachyonEchinochloa crusgalli68.9421.3891.58202forward
CNT3040196Brachypodium distachyonMarchantia polymorpha28.3329.1283.1383forward

Expression of CNT30148341

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MRARTARQLVSDVGVVDDEVTIDELAVGGDGPDEPPGDDPGGELDVDDDLPHGGLLLAADGDEVAPADPADPAGDVGGGRGWGEGGRRGEEHGG*

>peptide 2 (31 aa)
MNPLGMILAASSTSMMISLMAGFFSPLTAMR*

Sequence

>CNT30148341
CATGCGTGCACGCACGGCCCGCCAATTAGTATCCGATGTCGGCGTCGTCGACGACGAGGTCACCATTGATGAGCTCGCGGTAGGCGGCGACGGGCCAGAT
GAACCCCCTGGGGATGATCCTGGCGGCGAGCTCGACGTCGATGATGATCTCCCTCATGGCGGGCTTCTTCTCGCCGCTGACGGCGATGAGGTAGCTCCTG
CCGACCCAGCCGATCCAGCCGGCGATGTCGGCGGCGGCCGGGGGTGGGGAGAAGGTGGCCGCCGAGGAGAGGAGCACGGAGGATAGGGCGAGT