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Detailed information on CNT30148338


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020986Brachypodium distachyonCitrullus lanatus31.4613.8983.72129forward
CNT30563336Brachypodium distachyonActinidia chinensis11.2222.7795.6546reverse complement
CNT30257701Brachypodium distachyonAvena sativa24.8814.798.04102forward
CNT30367840Brachypodium distachyonSorghum bicolor24.8822.7298.04102forward
CNT3055442Brachypodium distachyonAmborella trichopoda25.856.7486.79106reverse complement
CNT30102868Brachypodium distachyonOryza rufipogon53.998.6699.1221forward
CNT30116778Brachypodium distachyonOryza nivara24.8815.597.06102forward

Expression of CNT30148338

Peptides detected in this lncRNA

>peptide 1 (85 aa)
LISLAFPAHQANPVVSWSRPAKTKVPLKSVSTWLTYLGISGSMLIFNSPKHFVACYALPRLWVPRYPPQAFPLLNLAINVKAMPS*

Sequence

>CNT30148338
AATTGATAAGTCTGGCATTCCCAGCCCACCAAGCAAACCCGGTGGTTTCTTGGTCACGACCAGCTAAAACGAAAGTTCCATTAAAGAGCGTTTCCACGTG
GTTGACCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTAT
CCACCGCAAGCCTTTCCTCTTTTGAACCTCGCCATTAACGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGGATCTTATCAACGTCCATGAAT
GCGAAATCATAGATCGAACTGCCGAATTGGCAAAATTCGGTGCTATCATAGTATCCGCTAAGTTCACGGGCTGGAGATAAGCGGACTCGAACCGCTGACA
TCCGCCACAG