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Detailed information on CNT30148227

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694973	Brachypodium distachyon	Oryza sativa	67.86	20.33	89.47	171	forward
CNT30672063	Brachypodium distachyon	Setaria viridis	66.67	32.56	89.29	168	forward
CNT30520246	Brachypodium distachyon	Setaria italica	62.7	16.81	91.77	158	forward
CNT30180108	Brachypodium distachyon	Secale cereale	66.67	76.71	89.88	168	forward
CNT30289434	Brachypodium distachyon	Triticum aestivum	67.86	29.53	93.57	171	forward
CNT30221546	Brachypodium distachyon	Hordeum vulgare	66.67	73.68	94.05	168	forward
CNT30392320	Brachypodium distachyon	Triticum turgidum	66.27	83.5	85.03	167	forward
CNT30554471	Brachypodium distachyon	Oryza glaberrima	67.86	31.03	89.47	171	forward
CNT30436341	Brachypodium distachyon	Aegilops tauschii	58.73	48.68	89.86	148	forward
CNT30248579	Brachypodium distachyon	Avena sativa	67.86	29.23	93.57	171	forward
CNT30658643	Brachypodium distachyon	Triticum dicoccoides	67.06	38.15	86.39	169	forward
CNT30447838	Brachypodium distachyon	Saccharum spontaneum	67.86	76.68	90.64	171	forward
CNT30681546	Brachypodium distachyon	Triticum urartu	66.67	76.71	95.83	168	forward
CNT30721558	Brachypodium distachyon	Triticum spelta	66.27	74.55	85.03	167	forward
CNT30341737	Brachypodium distachyon	Eragrostis tef	34.13	18.03	97.67	86	forward
CNT30361377	Brachypodium distachyon	Sorghum bicolor	67.86	15.19	90.06	171	forward
CNT30596537	Brachypodium distachyon	Oryza meridionalis	93.65	42.52	89.83	236	forward
CNT30370660	Brachypodium distachyon	Oryza glumipatula	67.86	29.79	89.47	171	forward
CNT30106627	Brachypodium distachyon	Oryza longistaminata	66.67	82.76	88.1	168	forward
CNT30102628	Brachypodium distachyon	Oryza rufipogon	67.86	13.48	89.47	171	forward
CNT30577143	Brachypodium distachyon	Oryza barthii	67.86	33.73	89.47	171	forward
CNT30496422	Brachypodium distachyon	Digitaria exilis	65.48	26.74	87.88	165	forward
CNT30117165	Brachypodium distachyon	Oryza nivara	67.86	38.17	89.47	171	forward
CNT30593977	Brachypodium distachyon	Eragrostis curvula	66.67	75.68	86.31	168	forward
CNT30604388	Brachypodium distachyon	Oryza punctata	43.65	33.13	93.64	110	forward
CNT30556802	Brachypodium distachyon	Panicum hallii	66.67	19	91.07	168	forward
CNT30551356	Brachypodium distachyon	Oryza brachyantha	43.65	31.79	92.73	110	forward

Expression of CNT30148227

Peptides detected in this lncRNA

>peptide 1 (82 aa)
ALAPLPEHDLGAVMDAAVGLVAMEGVEVEVDVVHHAHAPESLANVAALRPQHRLVLDDAGAVVDAAVVLVAVEGVEAEAGVVD

>peptide 2 (52 aa)
MLFTMRTHLNPLPTSRLSVHSTDSSWTTPVPSWTPPWSLSPWKASKPRRVLLT

>peptide 3 (30 aa)
SPSHHFQSTTSVPSWTPPWALSPWKASKLR*

Sequence

>CNT30148227
TCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCATGGACGCCGCCGTGGGCCTTGTCGCCATGGAAGGCGTCGAAGTTGAGGTAGATGTTGT
TCACCATGCGCACGCACCTGAATCCCTTGCCAACGTCGCGGCTCTCCGTCCACAGCACCGACTCGTCCTGGACGACGCCGGTGCCGTCGTGGACGCCGCC
GTGGTCCTTGTCGCCGTGGAAGGCGTCGAAGCCGAGGCGGGTGTTGTTGACC