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Detailed information on CNT30148081


BLAST search results

BLAST vs Swiss-Prot:
sp|A1E9X9|NU1C_SORBI, E-value = 6e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Brachypodium distachyonSetaria viridis12.2432.1295.16124forward
CNT30531354Brachypodium distachyonEucalyptus grandis88.1533.4783.65893forward
CNT30317759Brachypodium distachyonCorylus avellana89.1444.2983.39903forward
CNT30518402Brachypodium distachyonJuglans regia24.5865.0190.36249forward
CNT30615574Brachypodium distachyonSesamum indicum75.3251.2484.4763forward
CNT3020678Brachypodium distachyonCitrullus lanatus11.6530.5786.44118forward
CNT30406240Brachypodium distachyonBeta vulgaris25.0798.0787.4254forward
CNT30201817Brachypodium distachyonPisum sativum60.6199.3583.88614forward
CNT30712407Brachypodium distachyonGlycine max57.5547.0283.53583forward
CNT30569544Brachypodium distachyonActinidia chinensis87.3623.9584.52885forward
CNT30237694Brachypodium distachyonBrassica oleracea46.9943.4784.24476forward
CNT30262672Brachypodium distachyonBrassica rapa41.265.8483.49418forward
CNT30608772Brachypodium distachyonGossypium raimondii30.899.3688.14312forward
CNT30215974Brachypodium distachyonHelianthus annuus37.9152.4686.2384forward
CNT30689544Brachypodium distachyonTriticum urartu58.939.5694.14597forward
CNT30596717Brachypodium distachyonOryza meridionalis54.3959.2595.1551forward
CNT30360555Brachypodium distachyonLactuca sativa85.0978.7285.15862forward
CNT30151942Brachypodium distachyonPrunus persica86.7737.4582.82879forward
CNT3057989Brachypodium distachyonAmborella trichopoda42.8482.6787.1434forward
CNT3035415Brachypodium distachyonCucumis melo64.4697.7585.15653forward
CNT30116024Brachypodium distachyonOryza nivara43.4498.2195.45440forward
CNT30723989Brachypodium distachyonLupinus angustifolius39.5928.7782.79401forward

Expression of CNT30148081

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRCWIEADISLSNQTITSTSIVIPKRRVKMGRIHISP*

>peptide 2 (40 aa)
YETLTNVPCSTYCLLGITHEPSYHREHILNIYEKGYIGNR*

>peptide 3 (63 aa)
MAIHKKTPILRSAKAKRYPKGITKKLNKIDMTAIEGPMLNKGISPRDGRISSFKSSLVPSAIA*

Sequence

>CNT30148081
TATGAAACTTTGACCAATGTACCTTGTAGCACGTATTGTTTGTTGGGCATAACTCATGAACCCAGTTACCATAGGGAACATATTCTAAATATCTATGAAA
AAGGATATATAGGGAATAGATAAATCCCACCCGCCTAAGTAGAGAACTGTTACAAATAAAGAGGAAACTAATAAATTTAGGTAAGAAACAAGATAAAATA
AACCATATTTTATACCGGAATATTCGGTTTGATAACCTGCTACTAATTCTTCTTCTGCTTCTGGTAAATCAAAGGGTAATCTTTCACATTCTGCCAAAGA
AGAAATTAGAAAAACCAGAAAACCTATAGGCTGGCGCCAAATATTCCACCCAAAAAAACCATATTTGGACTGTGCTTCAACTATATCAACTGTACTTGAA
CTGTTAGATAATCATAATATTGCTAATACACAAAAAGTTAATGGTATTTCATAACTAATCGATTGAGCAGCAGCTCGTAGACCGCCTGAAAAAGAATATT
TATTATTTGAGCTATATCCTGCCATAAGAAGACCAATAGGAGCAATACTTGAAATGGCAATCCATAAAAAAACACCAATACTAAGATCAGCTAAAGCAAA
ACGATATCCCAAAGGGATCACTAAAAAACTTAATAAAATTGATATGACTGCTATAGAGGGTCCAATGCTAAATAAAGGAATATCCCCTCGAGATGGTAGA
ATATCCTCTTTTAAAAGTAGCTTAGTCCCATCTGCTATAGCTTGAAGTAGTCCTAGGGGACCGGCATATTCAGGACCAATGCGTTGTTGGATTGAAGCGG
ATATTTCTCTTTCTAACCAAACAATTACGAGTACTTCTATTGTGATTCCCAAAAGAAGGGTCAAAATGGGTAGAATCCATATAAGTCCATAGATTTCTTT
TAATAATTCTGATTTCGAAAAAGAATTGAGAGTTTCTACCTCTACCCTATCTATTATCATTTCAACGATCAACTTCCCCCATAATGATATCTATACTACC
TAATATCGTCATG