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Detailed information on CNT30148033


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30583294Brachypodium distachyonEchinochloa crusgalli73.4424.1290.63459forward

Expression of CNT30148033

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LFITGFFTMQYDSSRCSHKQYGIRKNTTTSHITIDTTTSKGQTNRGSRL*

>peptide 2 (41 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKI

>peptide 3 (65 aa)
MEGGLLLDVVICQGAAILQLLPGEDETLLVRGDALLVLDLCLDIVDRIRRLDLKGDGLAGEGLHKD

>peptide 4 (53 aa)
MPSLSWIFAFTLSIVSDDSTSSVMVLPVRVFTKICMPPLSLSTRWRVDSFWML*

Sequence

>CNT30148033
CTTATTCATAACAGGATTCTTCACGATGCAATACGACAGCAGCAGATGTTCACACAAACAGTACGGGATTAGAAAGAACACAACGACTTCTCACATAACC
ATAGACACGACTACTTCCAAGGGGCAGACCAACAGGGGCAGCAGACTGTAGGCCAGTTTTTGACAAACTTACTGGCCACCACGGAGGCGGAGCACCAGGT
GTAGGGTAGACTCCTTCTGGATGTTATAATCCGCCAGAGTGCGTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCC
CTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATCGTGTCAGACGACTCGACCTCGAGTGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATTTGC
ATGCCACCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCGAAGA
TGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATCGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTT
GCCGGTGAGGGTCTTCACAAAGATC