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Detailed information on CNT30147990


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B5|PSBA_SACHY, E-value = 6e-165

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693051Brachypodium distachyonOryza sativa71.2781.0193.331079forward
CNT30378684Brachypodium distachyonArabidopsis thaliana32.5648.5292.29493forward
CNT3021612Brachypodium distachyonCitrullus lanatus6.3447.2994.7996forward
CNT30198744Brachypodium distachyonPisum sativum15.3964.0183.69233forward
CNT3095573Brachypodium distachyonSolanum tuberosum5.8822.0387.6489forward
CNT30300480Brachypodium distachyonTriticum aestivum60.970.3895.12922forward
CNT30224357Brachypodium distachyonHordeum vulgare29.3929.4789.66445reverse complement
CNT30391503Brachypodium distachyonTriticum turgidum9.3128.299.29141forward
CNT30585847Brachypodium distachyonMusa acuminata9.1821.2983.45139reverse complement
CNT3089384Brachypodium distachyonVigna radiata31.115887.26471forward
CNT30540535Brachypodium distachyonBrassica napus61.2378.8388.46927forward
CNT30555706Brachypodium distachyonOryza glaberrima37.3282.4893.1565forward
CNT30145113Brachypodium distachyonMedicago truncatula20.8796.3491.46316forward
CNT30441777Brachypodium distachyonAegilops tauschii36.9999.4796.61560forward
CNT30667649Brachypodium distachyonTriticum dicoccoides12.8162.5894.85194reverse complement
CNT3059907Brachypodium distachyonArabidopsis lyrata13.6140.4788.35206forward
CNT30135270Brachypodium distachyonLolium perenne30.4513.4186.55461reverse complement
CNT3018289Brachypodium distachyonZea mays72.2642.1693.241094forward
CNT30229743Brachypodium distachyonAnanas comosus4.4928.8191.1868reverse complement
CNT3067750Brachypodium distachyonLeersia perrieri17.119796.53259forward
CNT30655381Brachypodium distachyonRosa chinensis25.8373.0892.33391forward
CNT30627899Brachypodium distachyonDaucus carota37.3244.5289.91565forward
CNT30683192Brachypodium distachyonTriticum urartu47.8971.5796.97725forward
CNT30360185Brachypodium distachyonLactuca sativa31.4466.3989.29476forward
CNT30484609Brachypodium distachyonChara braunii8.5933.0884.62130forward
CNT3058324Brachypodium distachyonAmborella trichopoda45.5710087.39690forward
CNT30102095Brachypodium distachyonOryza rufipogon4.8931.6297.374forward
CNT30577776Brachypodium distachyonOryza barthii12.1524.892.93184reverse complement
CNT30117690Brachypodium distachyonOryza nivara14.9970.7297.36227forward
CNT30604454Brachypodium distachyonOryza punctata8.8521.3792.54134reverse complement

Expression of CNT30147990

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSHNIISLFLLTKFVTLISRFIFSSYQGTMHSTE*

>peptide 2 (29 aa)
MSTKSAQRLDIHITKLTKPKKFVNEVSQN*

Sequence

>CNT30147990
GAAAATTAACTAATAACCAACCTATTGCTTCGTATTGTCGAGATCCTAACTAAGAAGCAGTCACTATCGGAATAAATATCTCTATCATAAATGAGTAGAT
CTATCATATAGTTGTAGCAACTGCAATTTTTTCTCTAAAAAAGAAACGAGATTCTAGGTTCTGAAGCAAAACTAAAGGGATGTAGATAAAGGGAAAGATG
ATAGAAAGAAGAATAAGTAAGATATAGGATTCCAATATGTATGGTCTATGAATTGCATCAAAAAAGGCAATGTGATAAAGCATCAATATAATATAATAAA
AATAACAGAGAATTAGAAATCGTAACTTGAAACAAGAACTACAAATTTAAAGCAATAATTAAAGAGCCACCCGGGTTAATAAAACTGAGAAAATTAACTC
GGAAAGACATTTTTTTGAAGCTCCGTTGCGGGATTCAGACCTAACAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATT
AATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTACCA
AGGAACCATGCATAGCACTGAATAGGGAACCGCCGAAAACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATAC
AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTCGCAGCTGCA
ACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGT
GTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATTGCCGCAGAAGT
AGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAG
GCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTATCCAGTTGC
AGAAGCGACCCCACACGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACATA
TTAACTAGAAATAATATAGATAATAGAAGGCTTGTTATTTAACAGTATAACATAGACTATATACCAATGTCAACTAAGTCAGCCCAAAGATTGGATATCC
ATATAACTAAATTAACCAAACCAAAAAAATTTGTAAATGAAGTGAGTCAAAATTAAAAACTCAGATTCCTCTTTTCAATTTTCCATATGGGTTGCCCGGG
ACTCGAACCCGGAA