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Detailed information on CNT30147977


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L399|PSAB_SACHY, E-value = 1e-143

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526549Brachypodium distachyonPhaseolus vulgaris25.5547.4285.3313forward
CNT30202037Brachypodium distachyonPisum sativum50.218.987.32615forward
CNT30289362Brachypodium distachyonTriticum aestivum41.9645.6597.67514forward
CNT30219816Brachypodium distachyonHordeum vulgare51.1831.4696.01627forward
CNT3059930Brachypodium distachyonArabidopsis lyrata14.6153.7593.85179forward
CNT30713469Brachypodium distachyonMalus domestica golden16.0839.487.82197forward
CNT30627902Brachypodium distachyonDaucus carota25.6335.287.9314forward
CNT30683954Brachypodium distachyonTriticum urartu51.1822.4497.29627forward
CNT30362291Brachypodium distachyonSorghum bicolor20.3362.7293.57249forward
CNT30430934Brachypodium distachyonPapaver somniferum50.539.4789.66619forward
CNT3057356Brachypodium distachyonAmborella trichopoda48.1624.5287.12590forward
CNT30585620Brachypodium distachyonEchinochloa crusgalli51.1812.2295.53627forward
CNT30496729Brachypodium distachyonDigitaria exilis51.1861.6595.69627forward

Expression of CNT30147977

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFRLAQAHRKESENRDLLYQVSNGNCEQIKHLNCVNVMD*

>peptide 2 (52 aa)
MMVRNIGQPQTLCFSPCDMSYHPLITYSTPNIRLHFPTEMENDYRNCIVHPE*

>peptide 3 (43 aa)
ICRLAMSKLYPLGKYRFDQDLLFWSTKSKHDVVMNIKAQGMES*

>peptide 4 (36 aa)
MIPSRYLTCSASPRPIVRKAKTEICFIRYQTGTASK*

Sequence

>CNT30147977
CATATGTCGTCTTGCCATGAGCAAATTGTATCCATTGGGCAAATATAGGTTCGATCAAGATTTGCTTTTCTGGAGTACCAAAAGCAAGCATGACGTCGTT
ATGAACATAAAGGCCCAAGGTATGGAATCCTAGAAAGAGGCTAGCCCAACTTAAATGAGATATGATAGCTTCTTTATGGTCTAACATTCTTGCCAATACA
TTATCCTCATTCTGTTCTGGATTGTAATCCCTAATGAAAAAGATAGCTCCATGAGCAAAAGCCCCTGTCATGATGAACCCTGCAATATATTGGTGATGAG
TATATAAAGCAGCTTGAGTAGTAAAGTCTTGCGCTATGAATGCATAAGCAGGTAAAGAGTACATATGTTGAGCTACTAAGGAAGTAATAACCCCTAAAGT
AGCTAGAGCAAGACCTAATTGAAAATGAATCGAATTATTGATTGTGTCGTAAAGACCCTTATGCCCCCGCCCTAATCGACCCCCCGGAGGAGTATGCGCT
TCTAAAAGATCTTTGATACTGTGTCCAATTCCGAAGTTAGTTCGATACATGTGACCGGCGATGAGAAAAATAAATGCAATAGCTAAATGATGGTGCGCAA
TATCGGTCAGCCACAAACTTTGTGTTTTTCCCCTTGTGATATGAGTTACCACCCCTTGATCACTTATAGTACCCCAAACATCCGATTGCATTTTCCAACT
GAAATGGAAAATGACTACCGAAATTGCATTGTACATCCAGAATAAACCTAAGAAAACATGATCCCAAGCAGATACTTGACATGTTCCGCCTCGCCCAGGC
CCATCGTAAGGAAAGCGAAAACCGAGATTTGCTTTATCAGGTATCAAACGGGAACTGCGAGCAAATAAAACACCTTAACTGCGTGAATGTGATGGACTAA
AAAAATCTGCAGTTCCTAATGGAATAGGTAACAAAGCCACTTTGCCGCCTACTGCTACTAACTCGCCACCTCCCCACGTTAAACTGGTACTTGTCGTTGC
ACCAGGAGCTGTTACACTAGGCGCGTTAGCATGGATATTTTGTACCCATTGAGCAAAGATAGGTTGTAATTGTATGGCAGTATCCGAAAACATATCTTGC
GGACGTCCTAAAGCACTCATGGTATCATTATGAATGTACAAACCAAAACTGTGAAAACCTAGAAATATACATACCCAGTTAAGGTGGGATATGATTGCAT
CACGGTGTCTAATGACGCGATCAAA