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Detailed information on CNT30147953


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Brachypodium distachyonSetaria viridis29.4662.5994.92256forward
CNT30523218Brachypodium distachyonSetaria italica35.7956.9693.25311forward
CNT30703567Brachypodium distachyonQuercus lobata27.547.3382.43239forward
CNT30375418Brachypodium distachyonArabidopsis thaliana9.936.4487.2186forward
CNT30617135Brachypodium distachyonSesamum indicum36.1331.3183.44314forward
CNT3069058Brachypodium distachyonQuercus suber25.7825.683.04224forward
CNT3042757Brachypodium distachyonPrunus dulcis32.847.0381.05285forward
CNT30186872Brachypodium distachyonSecale cereale35.6762.1295.48310forward
CNT30286397Brachypodium distachyonTriticum aestivum36.3650.3294.94316forward
CNT30219776Brachypodium distachyonHordeum vulgare28.0857.9694.26244forward
CNT30394717Brachypodium distachyonTriticum turgidum35.6761.5194.52310forward
CNT3086297Brachypodium distachyonVigna radiata35.7926.7482.64311forward
CNT30441099Brachypodium distachyonAegilops tauschii35.6760.0896.13310forward
CNT30252143Brachypodium distachyonAvena sativa35.129.595.74305forward
CNT30664208Brachypodium distachyonTriticum dicoccoides35.6761.6394.19310forward
CNT3059678Brachypodium distachyonArabidopsis lyrata18.5333.4783.23161forward
CNT3082467Brachypodium distachyonBrassica juncea30.6137.180.45266forward
CNT30471244Brachypodium distachyonSaccharum spontaneum36.1332.8194.27314forward
CNT30135649Brachypodium distachyonLolium perenne35.6760.4394.52310forward
CNT30679384Brachypodium distachyonTriticum urartu35.951.4994.23312forward
CNT30348363Brachypodium distachyonEragrostis tef36.3656.7394.3316forward
CNT30357929Brachypodium distachyonLactuca sativa33.3764.7380290forward
CNT30370989Brachypodium distachyonOryza glumipatula32.5745.2893.29283forward
CNT30645456Brachypodium distachyonCannabis sativa22.5525.5586.22196forward
CNT3024855Brachypodium distachyonPopulus trichocarpa14.521.4783.33126forward
CNT30331117Brachypodium distachyonDioscorea rotundata35.7932.8480.39311forward
CNT30101647Brachypodium distachyonOryza rufipogon34.1831.8792.59297forward
CNT30496126Brachypodium distachyonDigitaria exilis35.6745.5990.97310forward
CNT30117618Brachypodium distachyonOryza nivara25.3248.8993.18220forward

Expression of CNT30147953

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSPEMRFTPPRRARRRIAGFVMPWMLSRSTFRWRFAPPLPRPLPPLPRPDMAEFSLARNDETG*

>peptide 2 (34 aa)
FEFRAKIFRNFGAHENLQLRDSAQIRDEISNGTT*

Sequence

>CNT30147953
GTTTGAATTTAGAGCCAAAATATTCAGAAATTTTGGCGCCCATGAAAATTTACAGCTGAGAGATTCTGCGCAAATACGTGACGAAATTTCGAATGGCACG
ACATAGGGATCAGATCAAGCCGCCGTTTGGATGTTGCAACCAAAATATGTCGATACTTTAGCGCTCATACACAAGAAAAAAAAATTGGAATTCCTGTGAA
AATATGACGAAATAAATTAGGGGGGGCGCATATGAAACAGAAGCACAGATCTCAGATGGTATACAACAAGGCAAAATACCGAAAGGAACCGAATCCATTC
CATTAAACATATGCATCAATCGCATTGCAATTCACAGCACAAACCCAACAACCACCTCCAGCACCAAAGGAACAAGTAACCCTAGCAATCCCATCCTCAC
GAACACAGCCACACCCCACCACCAACAAGGAAACCAGAGAACCGAGCGGAGCCCAGATCCGGATGCGGACAGGACGGGATCAGCCGCCGAAGCCGTAGAG
GGTGCGGCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGCGGATGACGTTC
TCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCACGGCGCGCCAGGCGACGGATCGCCGGCTTCG
TGATGCCCTGGATGTTGTCCCGCAGCACCTTCCGGTGGCGCTTCGCGCCGCCCTTACCCAGGCCCTTGCCTCCCTTGCCGCGGCCCGACATGGCTGAGTT
CTCTCTAGCTCGGAACGACGAAACTGGATGATTTGGGAATTTGGGGATTTGGTGAGTGTGTTGTGGAGG