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Detailed information on CNT30147950


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 7e-154

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604305Brachypodium distachyonOryza punctata70.4473.4887.37665forward

Expression of CNT30147950

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWIFAFTLSIVSDDSTSSVMVLPVRVFTKICMPPLSLSTRWRVDSFWML*

>peptide 2 (36 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVR

>peptide 3 (41 aa)
MQYDSSRCSHKQYGIRKNTTTSHITIDTTTSKGQTNRGSRL*

>peptide 4 (61 aa)
MEGGLLLDVVICQGAAILQLLPGEDETLLVRGDALLVLDLCLDIVDRIRRLDLKGDGLAGEG

>peptide 5 (30 aa)
MVLPVKVLTKICMPPRRRSTRCKVDSFWIL*

Sequence

>CNT30147950
GTTCCATACAGCTAGCAAAAACGATTTTACATCAGGTGCAATTGCGTTTGTAAGAACGTTCGCATAACCACGAAGCCGTAATCACAGAACAAGGTTCATG
TTCACTTATTCATAACAGGATTCTTCACGATGCAATACGACAGCAGCAGATGTTCACACAAACAGTACGGGATTAGAAAGAACACAACGACTTCTCACAT
AACCATAGACACGACTACTTCCAAGGGGCAGACCAACAGGGGCAGCAGACTGTAGGCCAGTTTTTGACAAACTTACTGGCCACCACGGAGGCGGAGCACC
AGGTGCAGAGTGGATTCTTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAGATTAGGCGCTGCTGGTCCGGTGGAA
TTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGAGTAATGGTCTTGCCTGTCAAGGTCTTGACAAAGAT
TTGCATGCCACCACGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGGATATTGTAATCTGCCAGGGTGCGACCGTCTTCCAGTTGCTTGCCAGCA
AAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATCGTGTCAGACGACTCGACCTCGAGTGTGATGG
TCTTGCCAGTAAGGGTCTTCACAAAGATTTGCATGCCACCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGT
GCGGCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATCGTA
TCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT