« Back to Brachypodium distachyon search


Detailed information on CNT30147885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407349Brachypodium distachyonBeta vulgaris2650.8290.32124reverse complement
CNT30309694Brachypodium distachyonCamelina sativa53.675393.36256forward
CNT30606094Brachypodium distachyonGossypium raimondii57.6572.3789.82275forward
CNT30367812Brachypodium distachyonSorghum bicolor36.984.2195.45176reverse complement

Expression of CNT30147885

Peptides detected in this lncRNA

>peptide 1 (62 aa)
LTSSFPVAVVTSSHNSASAAEATVPLRPQVRSPPKSGATTILNLARFSPLGAGHRVSTLVIS*

Sequence

>CNT30147885
GCTCACATCGTCCTTCCCCGTCGCCGTCGTGACGTCTTCGCACAACTCCGCCTCCGCCGCTGAAGCCACAGTTCCCCTGAGGCCACAGGTGCGGAGCCCT
CCGAAGAGCGGAGCTACAACCATACTCAATCTAGCGCGCTTCTCGCCCCTGGGTGCAGGCCACCGGGTCTCTACTTTGGTGATCTCGTAGTTCCTACAGG
GTGGAGACAATGGGGTCGGTCCATGGATTTTGCTTCCTTTTGCTACATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGTTATTCGCAAGGGCCA
ACTTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAAGCCTAGGAGAGCCGCCGACTCCAACTATCGTCCATGTACGATCCATACTAGATCTGACCAACT
GCCCATCCTACCTCCTCTACCTTTTTGACAGCCCATCTTTTTGTCTCAGTAGAGTCTTTCATTCTGTTGTGTTGTTT