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Detailed information on CNT30147862

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30524653	Brachypodium distachyon	Setaria italica	54.75	12.02	100	144	reverse complement
CNT3020362	Brachypodium distachyon	Citrullus lanatus	23.57	1.96	93.55	62	forward
CNT30632593	Brachypodium distachyon	Vigna unguiculata	54.75	8.53	97.22	144	reverse complement
CNT30504983	Brachypodium distachyon	Nicotiana attenuata	54.75	7.91	99.31	144	reverse complement
CNT30301288	Brachypodium distachyon	Triticum aestivum	54.75	11.29	100	144	forward
CNT30221285	Brachypodium distachyon	Hordeum vulgare	55.51	22.81	100	146	forward
CNT30395031	Brachypodium distachyon	Triticum turgidum	54.75	18.82	100	144	reverse complement
CNT30234810	Brachypodium distachyon	Brassica oleracea	54.75	19.02	95.14	144	forward
CNT30553653	Brachypodium distachyon	Oryza glaberrima	54.75	7.4	97.92	144	reverse complement
CNT30147394	Brachypodium distachyon	Medicago truncatula	54.75	7.23	98.61	144	reverse complement
CNT30248040	Brachypodium distachyon	Avena sativa	54.75	10.7	100	144	forward
CNT30218527	Brachypodium distachyon	Kalanchoe fedtschenkoi	54.75	9.67	99.31	144	forward
CNT30215771	Brachypodium distachyon	Helianthus annuus	54.75	30.7	99.31	144	reverse complement
CNT30682017	Brachypodium distachyon	Triticum urartu	54.75	17.78	98.61	144	reverse complement
CNT30154718	Brachypodium distachyon	Prunus persica	55.13	20.92	95.86	145	reverse complement
CNT30576076	Brachypodium distachyon	Oryza barthii	54.75	3.2	98.61	144	reverse complement
CNT30582488	Brachypodium distachyon	Echinochloa crusgalli	54.75	11.86	100	144	reverse complement

Expression of CNT30147862

Peptides detected in this lncRNA

>peptide 1 (34 aa)
FVFELQIDQLSIIGLVSLYLTNYLILRRLIKQRF*

Sequence

>CNT30147862
TTTGTGTTTGAACTCCAAATTGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCT
TTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCAAACACAATTTGTTTTCTGCCCCTATCTCCCGCAA
GTTTATACTTAGAATTCATACGCTCAATGTTCTCTTTAGTCGTCTCATGCATTTTTATTATAA