Detailed information on CNT30147808


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523179Brachypodium distachyonSetaria italica6.5335.5183.6798reverse complement
CNT30552159Brachypodium distachyonOryza glaberrima6.221.2883.8793reverse complement
CNT30349956Brachypodium distachyonEragrostis tef6.2636.2987.2394reverse complement
CNT30596024Brachypodium distachyonOryza meridionalis6.3335.3285.2695forward
CNT30370879Brachypodium distachyonOryza glumipatula6.3341.1385.2695forward
CNT30100349Brachypodium distachyonOryza rufipogon5.637.3385.7184forward
CNT30574856Brachypodium distachyonOryza barthii6.220.5384.9593reverse complement

Expression of CNT30147808

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MYTLMAYQESSTIGSYLTHLMVPIGLEIALMLDRRGGG*

>peptide 2 (33 aa)
MFTTHHRVSSSVICTSTTPAPHQGRNTRKICTR*

>peptide 3 (31 aa)
MGYAWVLLRGHVPDGKGSASSDIAASPRNPL*

>peptide 4 (98 aa)
MRSREKLPGRSPILKLLSRETSRSGQARLTLRFLSDGLPKKKVYLVDMSILSILLSCRPMCHGTAPSAPASSLYPPPTSVSSLSSVPCSPLTTVSPPL*

>peptide 5 (80 aa)
MGWAMPGCSSGATYPTARARHRRTSPQALEILSDLKLDSSGEAHVTGSLLVPLLHLCSPSTSVELPNSFVLMSTGATGGC*

>peptide 6 (74 aa)
MPPFTTDGRGSSGGRGGDEGGHGGAEVRREEEEEGISDLGKGCCVCACMVKVTRHRGEEKEDEATSKRVGCAGC*

>peptide 7 (56 aa)
MSFQTDFVLTHALPGETSGSVTNPQIALARNFPVGASTLNLEVPFGWAPEKEGIPC*

Sequence

>CNT30147808
AAAGAGCAGACATGTCAGACATATCTTCATCCAGTGGTTCTGATGCGTCAACTTAGATTTAAACCTTTTTAAAAAAAAATTCATACAATTGAGATATAAC
TACACCGTAAAAAACCTAGGGCTTATTCGTTTCATAGGATTTTGAAATCATAGGAATAGGAAAATTACAGGATTGGAATGCCAATGAACACTCCAATCCT
TTGAATTTGTAACGCCCCAGCGTCACTACTGGCAGCTCTCTAGGCTTCAAAACTGGCCCCACAGACCAACACATGTCTTTCCAGACAGATTTTGTCCTCA
CTCATGCGCTCCCGGGAGAAACTTCCGGGTCGGTCACCAATCCTCAAATTGCTCTCGCGAGAAACTTCCCGGTCGGGGCAAGCACGCTTAACCTTGAGGT
TCCTTTCGGATGGGCTCCCGAAAAAGAAGGTATACCTTGTTGATATGAGTATTCTATCAATCCTATTAAGCTGTAGGCCAATGTGTCACGGCACCGCTCC
GTCAGCACCAGCATCCTCTCTATATCCACCACCGACGTCGGTCTCATCTTTATCCTCAGTCCCATGTTCACCACTCACCACCGTGTCTCCTCCTCTGTAA
TTTGTACTTCCACAACGCCTGCACCACATCAAGGGAGGAATACACGAAAAATATGTACACGCTAATGGCCTATCAAGAATCAAGTACCATTGGATCATAC
CTTACACATTTGATGGTGCCAATAGGGCTCGAGATTGCGTTGATGCTCGATAGGAGGGGGGGGGGGTGACGAGCTTGACGAGCAGGACACCGAAGTAGTA
GACGCTGGTCTTGTTCATGGGATGGGCTATGCCTGGGTGCTCCTCCGGGGCCACGTACCCGACGGCAAGGGCTCGGCATCGTCGGACATCGCCGCAAGCC
CTCGAAATCCTCTCTGATCTCAAGTTGGATAGCAGCGGGGAGGCCCACGTCACCGGGTCCCTTCTTGTTCCTCTTCTTCACCTTTGCTCTCCATCCACCA
GCGTCGAGTTGCCTAACTCCTTCGTCCTCATGAGTACAGGAGCCACTGGCGGGTGCTAGGTCGAGGCTGCGCACATGCCTCCATTTACAACGGATGGCAG
AGGTAGCAGCGGCGGACGAGGAGGAGACGAAGGGGGGCATGGTGGTGCGGAGGTGAGGCGCGAGGAGGAAGAGGAGGGGATCAGCGATTTGGGGAAGGGT
TGCTGTGTGTGTGCGTGCATGGTCAAGGTGACGAGGCATCGAGGAGAGGAGAAGGAAGACGAAGCAACAAGCAAGAGGGTGGGCTGCGCTGGCTGCTAAC
TAGGCCTTGGCCCAAGCGGAAGAAGGAAAGATGGGCTCAACCCAGGTGGAGAATAGGTCGATTGTTCGGTAGCGAAGCAAGTATGGAACGTTCTCCCAAT
AGATTAATTGCTAACTAAAATAGTATCATATGCGTTATTGTTACTCCCACTAGGACCAGCATAAGACAGACCAATTACATGACTAATTAATGCATATATA
C