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Detailed information on CNT30147748


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406248Brachypodium distachyonBeta vulgaris37.3910096.03252forward
CNT30201820Brachypodium distachyonPisum sativum80.5696.9695.21543forward
CNT30503696Brachypodium distachyonNicotiana attenuata30.2719.2399.51204forward
CNT3053197Brachypodium distachyonAmborella trichopoda85.1635.9290.94574forward
CNT3036892Brachypodium distachyonCucumis melo49.2630.4694.88332forward

Expression of CNT30147748

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLAYPSFESPTIIPIITYPICPMDEYASIRFMLV*

Sequence

>CNT30147748
ATTTCTCACATAAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTTATTATTTTTAGATAATAGTAGATAGAAAGAACGCTCGTAAGGAGTCCT
ATTGAAACCAAGAAATATAGGCCTGCTTGCCATCCACACCAGAATAGATAGAGTTTTCCGAAGAAACCTGCTAGTGGAGGAAGGCCTCCTAGGGATAAGA
GACATAGGGCTAAAGAGAGAGCCAAAAAAGGATCTTTCGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATAATACAAT
GCAAGCAAAAGTTCCTAGATTCATGGAGATATAGAACAGCATATAAGTTATCATGCTTGCATATCCATCATTTGAGTCTCCAACAATTATTCCAATAATT
ACATATCCGATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATCATGCTAAGAATAGCTA
GGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAGAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGA
AAGAAAAGCAACGACTGGAGTGGGGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATAAACGCA