Detailed information on CNT30147428


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619235Medicago truncatulaSesamum indicum33.6410.4892.66259reverse complement
CNT30635771Medicago truncatulaCapsicum annuum21.5646.1190.96166reverse complement
CNT30592641Medicago truncatulaMusa acuminata25.062.8792.75193reverse complement
CNT30609506Medicago truncatulaGossypium raimondii2031.6989.61154forward
CNT30720486Medicago truncatulaTriticum spelta25.0682.4891.19193reverse complement
CNT30431658Medicago truncatulaPapaver somniferum24.1611.7295.16186reverse complement

Expression of CNT30147428

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MALLYLTLVFNRVCSFFFGRVCQYDLNEVRGFASDIRWASLFGRLRPGVKCNNENIFLFNDSFFSIFISWL*

>peptide 2 (57 aa)
MILMRCGALHLTFVGLPSSGDCVPALSVTMKTYFYSMIRSLVFLFLGFDSKDIRIDM*

>peptide 3 (64 aa)
VLFYDNLMINFVPDHLHFLLEITCDNFRSEVCFETVLCSNKQSGLFNHRQSACLLLALSNYHKR*

>peptide 4 (29 aa)
MSRARSGIWGEPVCFCEKARLLLLLEKKT*

Sequence

>CNT30147428
AGTTCTCTTTTATGATAATCTAATGATCAATTTTGTACCAGATCACTTACATTTTTTGTTGGAAATCACTTGTGATAACTTCAGAAGTGAAGTGTGTTTT
GAAACCGTTCTGTGTAGCAACAAGCAATCAGGCCTATTTAACCATCGGCAATCAGCCTGCCTCTTGCTGGCCTTATCGAATTATCATAAGCGGTGATGTA
CACGGGAGAAGGAGCCAGTGAGTCCTCATAAATGTCAAGGGCGCGCAGCGGGATATGGGGGGAACCCGTATGTTTTTGTGAAAAAGCCCGGCTCCTGTTA
TTGCTGGAAAAAAAAACCTAATAACTCTATTTGATGTCGATTCATCCATACTTCCATTTTAGAGGGAGGCTGACTGCTTGCCGGCTGGTAGCTGTATGAG
CGGTAACGTCCACGTACGGCTCCGTGAGTAGGGCGGTGGACAGAAATGGCCTTGTTGTACCTCACTCTCGTCTTCAATAGGGTCTGCTCTTTTTTTTTTG
GGAGAGTATGCCAATATGATCTTAATGAGGTGCGGGGCTTTGCATCTGACATTCGTTGGGCTTCCCTCTTCGGGAGACTGCGTCCCGGCGTTAAGTGTAA
CAATGAAAACATATTTTTATTCAATGATTCGTTCTTTAGTATTTTTATTTCTTGGCTTTGATTCGAAGGACATAAGAATTGATATGTAAACATGTTTTTC
TGCAGCATGTTGGCCTCGAGATTTGATTTGGTGATATCTAGTAAATTTTTGGTTCGAATTTTCTTTGCCC