« Back to Medicago truncatula search


Detailed information on CNT30147396


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 5e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Medicago truncatulaSetaria viridis34.1589.0498.131016reverse complement
CNT30524649Medicago truncatulaSetaria italica40.1736.2697.991195forward
CNT30641383Medicago truncatulaNymphaea colorata45.9243.7394.661366forward
CNT30550219Medicago truncatulaIpomoea triloba47.1332.2998.721402forward
CNT30702366Medicago truncatulaQuercus lobata33.4810098.59996reverse complement
CNT30378673Medicago truncatulaArabidopsis thaliana23.0955.0998.4687reverse complement
CNT30283003Medicago truncatulaChenopodium quinoa30.9696.4497.29921reverse complement
CNT3020470Medicago truncatulaCitrullus lanatus11.3662.7198.52338reverse complement
CNT30505560Medicago truncatulaNicotiana attenuata45.5861.3398.231356reverse complement
CNT30712072Medicago truncatulaGlycine max21.45100.6393.57638forward
CNT30637481Medicago truncatulaCapsicum annuum10.6670.7695.58317forward
CNT3094274Medicago truncatulaSolanum tuberosum7.1371.8699.53212reverse complement
CNT30185187Medicago truncatulaSecale cereale46.4239.0497.391381forward
CNT30299053Medicago truncatulaTriticum aestivum46.4238.5497.031381forward
CNT30221833Medicago truncatulaHordeum vulgare30.9967.5596.1922forward
CNT30394721Medicago truncatulaTriticum turgidum46.4237.797.321381forward
CNT30569655Medicago truncatulaActinidia chinensis47.0339.2998.071399forward
CNT30543278Medicago truncatulaBrassica napus26.4929.1997.21788forward
CNT30508923Medicago truncatulaSolanum lycopersicum10.1290.1299.67301forward
CNT30554477Medicago truncatulaOryza glaberrima13.0153.5397.42387reverse complement
CNT30438197Medicago truncatulaAegilops tauschii34.3297.5298.141021forward
CNT30258490Medicago truncatulaAvena sativa12.350.6997.27366forward
CNT30660235Medicago truncatulaTriticum dicoccoides31.6310097.45941reverse complement
CNT30140161Medicago truncatulaLolium perenne46.4240.5797.611381forward
CNT3017954Medicago truncatulaZea mays46.6636.6396.761388forward
CNT30605146Medicago truncatulaGossypium raimondii37.4572.9598.651114reverse complement
CNT30216563Medicago truncatulaKalanchoe fedtschenkoi46.7935.7998.641392forward
CNT30655407Medicago truncatulaRosa chinensis46.1541.0798.761373forward
CNT30202530Medicago truncatulaHelianthus annuus20.1381.7297.66599forward
CNT30715685Medicago truncatulaMalus domestica golden14.3935.1785.98428reverse complement
CNT30628241Medicago truncatulaDaucus carota44.6149.1599.021327reverse complement
CNT30682011Medicago truncatulaTriticum urartu32.7710097.95975forward
CNT30721631Medicago truncatulaTriticum spelta46.4239.7697.251381forward
CNT30346087Medicago truncatulaEragrostis tef26.3975.9297.45785forward
CNT30595568Medicago truncatulaOryza meridionalis7.7659.5493.07231reverse complement
CNT30359771Medicago truncatulaLactuca sativa30.1885.9399898forward
CNT30369921Medicago truncatulaOryza glumipatula7.6398.796.92227forward
CNT30484250Medicago truncatulaChara braunii6.2925.7694.65187reverse complement
CNT30429739Medicago truncatulaPapaver somniferum43.7640.4794.321302forward
CNT30571858Medicago truncatulaVitis vinifera46.9240.2899.211396reverse complement
CNT3056076Medicago truncatulaAmborella trichopoda39.1350.5693.131164forward
CNT30320583Medicago truncatulaAsparagus officinalis8.9724.3498.5267forward
CNT30118993Medicago truncatulaCitrus clementina9.1877.5694.87273forward
CNT3038324Medicago truncatulaCucumis melo45.4871.7497.041353reverse complement
CNT30331625Medicago truncatulaDioscorea rotundata7.8773.5897.01234forward
CNT3099471Medicago truncatulaOryza rufipogon6.4275.7997.91191reverse complement
CNT30499372Medicago truncatulaDigitaria exilis43.4338.0197.521292forward
CNT30603680Medicago truncatulaOryza punctata46.4234.9997.541381forward
CNT30557400Medicago truncatulaPanicum hallii21.8247.396.92649forward
CNT3039925Medicago truncatulaMarchantia polymorpha10.9965.9395.72327forward

Expression of CNT30147396

Peptides detected in this lncRNA

>peptide 1 (54 aa)
HCVLSENADMSNDKSCEKHDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTRK*

Sequence

>CNT30147396
ACACTGTGTGTTAAGTGAGAATGCTGACATGAGTAACGATAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTA
CGCAGAGTTAATCGGTCCCTAAGGAAGCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCT
GTTGGAGTGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAAGATTAACCTTGAGTCATCAAAGCCTTTCTGACTCG
GCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGTAGTTTACTTGCTTACTCGTTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
CATAGTAGCGAGTCTGTTTATAGTCGCGACTGTTGTCATAGTCAACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTG
AACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACT
TCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTC
TAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAAT
TGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTAACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGG
ATAGGTGGGAGGTGATGACACAGAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGAAAATTCGGGGGGGGCGGGAC
ACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGCGTAATG
GTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCTTGTGGAAGGGCTCTCGCTCAACGGA
TCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGA
AGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTA
AAGGGAGAACTGCGAGGAGCCAGCCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCTGCTAA
GTTGGTATGGAAGAACTGCTGCTAAGCGGGAAATCCTTCTCTATACAAGTTCTCGAACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCA
CCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTACTTTCACTTTCCATAACAAAATAAAAGTAAACCTATTCCTCCTGACTCTAACAAGTAAGCAA
GTAAACTGCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTAGTAGCCGCCCCCTACTTGCTCATTCGCTATTACTACAAAGTCGCCCCTCTCTCTAAGGG
GGCTTATGAACTCAACAACTTTCTCTTATGTTATGGGGTCGCGAATAATTTAGCTGCCAACCCTAGTCAGCAAGCTGAAATGAAAAAGTCCTTTCTAATA
AATAAGGTAAGCTTCATAGCTCCAACCTAGGTTAGGGGGTCGTTAGACCGCCGCTTACTTACTAAGCGCTGGTTCTATCCCGGCCAAGCAACCAAAGCCG
GGGACCTAGGTGGGAATAGTGAAAGAAAAGAAAGAGAGGGGGAAGAAGCGGGGTAGAGTAGTTGGTTAACTCGTCAGGCTCATGATCTGAAGATTGCTGG
TTCGAATCCAGCCCCCGCCATGTCTTGATTTCTAAAAGTCTGAACTTGAACCCTAGTTTCCATCAAGCAAGACGGACCGAGGGCAGTTTCCCCGATGGCG
CGGTTACTATCCGGAATATTTAGAAAAGCTGCCAAGCAATAAAAGCAAAGCCAAATATGAGGACATGAACGCAGAGCATGCCATGCATTGTTTTCCAAGA
ATGACTACTTTGAATGGTCAGGAGCAATAGCCACTCTACTTCCACCAGCTGAGATCAAAGCACGAAAGAAAGTATTTAGTCTGTATCTGAACCATAGCCA
TATGCTGAAACCATAAAATGAGATGACCGAGACGATAGAACCGTAACCGATAGGAAAGAAAGCTGGCGCAAAAGAAAGACATACCAGACCGGGTCAAAAG
AGAGATTGCCCTCCGGCTGCATTTCCGAGGAATTCACTTCAACCACGTACTTCCATACATCAGAGGTCAAGCCCTCTTAAAGCCCAGCCCAACCAAAGCA
AAGCCAGCGAGTCAGTTCGGCTTTCTTGATGTCCGAAGGTGAAGACAAGTAGAGAATTGACCTTGACCGGAGCACCGAGAACGAGAACATATAGTGCCTT
TCTTTTTTCAATTATGCCCGCTGACCGCTTTAGGAGGTGGAACCCCGAAGGAGAGATAGGGCTGAAATTATCACCTCACTGACGAAGCCTTTAGCAGATA
TCACATGGGTGGGGCATTCAAACTTTGAAAAGGGGCAGGCCCTGAACACTATTATTCTGACAACGTCGATCTGGC