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Detailed information on CNT30147389


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504983Medicago truncatulaNicotiana attenuata56.6528.7898.28524reverse complement
CNT30221494Medicago truncatulaHordeum vulgare62.9246.8698.11582reverse complement
CNT30234810Medicago truncatulaBrassica oleracea75.7892.693.44701forward
CNT30229838Medicago truncatulaAnanas comosus47.8910097.29443forward
CNT30218527Medicago truncatulaKalanchoe fedtschenkoi95.7859.598.19886forward
CNT30154718Medicago truncatulaPrunus persica66.0588.1794.27611reverse complement
CNT3037914Medicago truncatulaCucumis melo44.7619.4590.34414reverse complement

Expression of CNT30147389

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MLSHSSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFHQFLATLTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 2 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

Sequence

>CNT30147389
GGAATTGGTTAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCGAGGCGGAGTGTTTAACGCGTTAGCTGGGCCCCTGATCCACGT
AGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCCGTTCGCTCCCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCA
GAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTT
CGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCC
CGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCC
CTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCA
GTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCT
TTTTAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCATTACGCACCCGTTCGCCACTTTGTTTTCAACTGTTCCCACCTCCTGGGC
GAGACAAGCTACCTTCACGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCT
TCTGAGCCAGGATCAAACTCTTCTT