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Detailed information on CNT30147387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Medicago truncatulaSetaria viridis50.636.6298.82338forward
CNT30637323Medicago truncatulaCapsicum annuum86.3840.8690.64577reverse complement
CNT3098505Medicago truncatulaSolanum tuberosum89.6761.0693.32599forward
CNT30435015Medicago truncatulaAegilops tauschii67.2239.8498.22449forward
CNT30249262Medicago truncatulaAvena sativa32.047.892.99214forward
CNT30314095Medicago truncatulaCamelina sativa20.21995.56135forward
CNT30360998Medicago truncatulaLactuca sativa43.4110099.31290reverse complement
CNT30323793Medicago truncatulaAsparagus officinalis25.353.4896.45169reverse complement
CNT30151602Medicago truncatulaBrachypodium distachyon42.3756.4990.46283forward
CNT30581589Medicago truncatulaEchinochloa crusgalli82.0456.1594.89548forward
CNT30726123Medicago truncatulaLupinus angustifolius26.25.2897.14175reverse complement
CNT3040451Medicago truncatulaMarchantia polymorpha27.130.8393.92181reverse complement

Expression of CNT30147387

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 2 (52 aa)
PLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGRMLRAKPIPRV*

>peptide 3 (37 aa)
PYGYLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

>peptide 4 (51 aa)
MPSLSPPPTRRRRHLQEKAKNWTLLNKRENFLFSKATSKGLSCAFAHPSYMS

Sequence

>CNT30147387
CCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACAC
AGAAGTCATGGGTGATCATTGGTCGGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGC
ATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAG
CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC
TGGCAGTCCCTCGTGAGTGCGGCATGCACCTTTTTGTTTGTTTCGGAGCCGTTTGTTTTGGCGGGGCGTACTAAACCCACTACGTACCACACCACCGGGC
GGCTCGCCTGAATGCCGAGTCTTTCTCCGCCGCCAACTCGACGTCGTCGTCACCTGCAAGAGAAGGCCAAAAACTGGACTTTACTAAACAAGCGAGAAAA
CTTTCTATTTAGTAAAGCAACAAGCAAGGGATTGAGCTGCGCGTTCGCGCATCCCAGTTACATGTCCT