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Detailed information on CNT30146490


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30310223Medicago truncatulaCamelina sativa36.392087.79131forward
CNT30420453Medicago truncatulaPapaver somniferum43.3317.4784.62156forward
CNT30113801Medicago truncatulaFicus carica20.5617.9289.1974forward

Expression of CNT30146490

Peptides detected in this lncRNA

>peptide 1 (65 aa)
GDKDKEGGSNNGSEELSDDVNDTTEEGDVTTNEGTEGDSGVDMSTGDVSTNGDSNKESECMGDGG*

>peptide 2 (51 aa)
MLPPTKAPKVTAGLTCPPEMLAPTETATKRANAWAMEVEMNSAKPAFKVSG*

Sequence

>CNT30146490
GCGGTGACAAAGACAAGGAGGGCGGAAGCAACAATGGATCCGAGGAGTTGAGCGATGATGTAAACGATACCACGGAGGAGGGTGATGTTACCACCAACGA
AGGCACCGAAGGTGACAGCGGGGTTGACATGTCCACCGGAGATGTTAGCACCAACGGAGACAGCAACAAAGAGAGCGAATGCATGGGCGATGGAGGTTGA
GATGAACTCAGCCAAACCTGCTTTCAAGGTGTCTGGGTGAGTTGCCTCTTGAGGTGTTCCTACGGCGATGTTTCTGATAGGCATGTTGAAATAATCGCTT
TTGTTAACAAACACTCACTCTTTTTTTTTAGTTACTGTGAAAGCGCTTTCTGGTTTTCGC