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Detailed information on CNT30146477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Medicago truncatulaEucalyptus grandis7.6225.1984.96133forward
CNT30265141Medicago truncatulaBrassica rapa6.1926.0282.41108forward
CNT30202534Medicago truncatulaHelianthus annuus13.1748.1281.74230forward
CNT30355916Medicago truncatulaLactuca sativa16.2153.477.74283forward

Expression of CNT30146477

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFGSLVSSTEPQRGHLNYHDFRTTYTLELKKIT*

>peptide 2 (79 aa)
MTNLATNLKASNSLKTPQLLTKIRNTNSMMKNPTSPIIIRIGSTNNTNKRQILTISTSYSIKNTQPTNSESNNTSTDAT*

>peptide 3 (38 aa)
GKQVCISRFDNLGTECSTHSTPISSNEMVMVLRNHPFS*

>peptide 4 (38 aa)
MVGSLLCCFVVCMKRRRCLLVLLYLKILTLFPFCCVMK*

Sequence

>CNT30146477
CCGGCAAACAAGTATGCATCAGCAGATTCGACAATCTCGGCACAGAATGCAGTACTCACAGCACCCCAATAAGTTCCAATGAAATGGTGATGGTGCTCCG
GAACCATCCCTTTAGCTGATGGCATCACTGCAAGTGCGTAACCACTCGCATCAGCTAGTTCGACAAAAGCATTAGATGCTTTCGCCACCCTCAGTTTAGG
ACCACCTACTAGTACAGGTTTTACTGCTTTGTTAAGAAACTCTGCTGCTGCCTCAACTGCTGCCTCCAACCCCATGTGGTTACTCAATCTGCAAAAAAAA
CAAAAATTAGATAAAGACTAATCATCAACATTTCCAATAATCGGTTCCTCTTCTTCACACATAAGTTTGTAAAATTTCATGTGATTCAATATAGTAAAAA
GACCAGAAATTCCATTATTGCTAAATCTATTCATGTGATTCAATGAAGAATGACATCAAATCAGCTAAAGGTGGTAGAATCACATTGGGCCACCCCGATT
TTAACAAAAACTAGCCTTTGAAGCTTCAACAATCTCACAGTACCACAATGATTCCACCAAACTTCAGCTAATTCAAACATGCACATTTATTGAACATCGT
GTTTAAAGCAAGTTTGGTGTAAGCTTTTCAATTTAAAACAAAAGCCAAATTCTTTGTATGATTTGAACTGTAATATAGAAGACACGCTAATTACTTGAAA
GTGGGATGAGGAACAAATAGAGAAAGACTTACTTGGGAGCGAGTGAAAAGGGGACAGGATCACGGCTGAAAGTGGGATGAGGAATACCAGGCAAGTTACA
GCCAATGCTTATATAAACGGGCTTGCTCTCTTTCAGCGCAGTTGAAATCGCAGTATCAATCAACTCATGAGCATCTTCCAAGTTATTCACCACAGCCTAT
AATCAAATCAAACCACAATCAAAACAATCACCAAAACCCATTTTACAACAACTAAGTGCATGTATGTTTGGATCACTAGTGAGTTCGACAGAACCACAAC
GTGGCCACTTAAATTACCATGATTTTAGGACAACGTACACTTTAGAGCTTAAAAAAATCACTTAAGTTCTTCAAACTCACTGTAACGTGCACACTACTAC
ACACTAACTCACCAACTTCACAAACACAATAAACACAAGAAAACAAAATCATCATTAAACAAGTCAACCCAAAAACCAAAAGATGACAAATTTAGCAACC
AACCTGAAAGCAAGTAACAGTTTGAAAACACCTCAACTCCTGACTAAAATCAGGAACACCAATAGTATGATGAAGAATCCTACTAGTCCCATAATCATTA
GAATTGGGTCCACCAACAATACAAATAAGCGGCAAATTCTCACTATAAGCACCAGCTATAGCATTAAGAACACTCAACCCACCAACAGTGAAAGTAACAA
CACAAGCACCGACGCCACGTGACCGAGCATAACCATCAGCCGCATAACCAGCATTTAGCTCGTTACAGCAACCGATGAGGTTCAGCTCCGGTTCATTGAT
GAGATGATCGAGAAGTGTGAGATTGAAGTCGCCGGGAACGGAGAATACATCGGTGACTCCGACCTGAACTAGCCTCCGTGCTAGGTGGCGATCGCGGTGG
ATGGTTGGATCGTTGCTGTGCTGTTTTGTTGTTTGCATGAAACGACGTCGTTGCTTGTTGGTTTTGCTATATCTAAAGATCCTAACATTGTTTCCATTTT
GTTGTGTAATGAAATGAAATGAATATTTTGAAGTATAGTTTTGATG