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Detailed information on CNT30145942


BLAST search results

BLAST vs Swiss-Prot:
sp|P51079|CHS6_MEDSA, E-value = 1e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30171603Medicago truncatulaTrifolium pratense68.178.1890.29412forward
CNT30573615Medicago truncatulaVitis vinifera25.7910.1984.62156forward

Expression of CNT30145942

Peptides detected in this lncRNA

>peptide 1 (31 aa)
CGVTNAFLTSLNNFKRFLDCRYNLGWCRGYK*

>peptide 2 (42 aa)
MNNTHALDMLPYSLSTSLVAFIFSGFKPNFSSTWSRIAGPPG*

Sequence

>CNT30145942
TTGTGGTGTGACTAATGCCTTTTTGACAAGTTTGAATAATTTTAAACGTTTCCTTGATTGTAGATACAATTTAGGATGGTGTCGTGGCTATAAATAGCTT
TACATTACTCTCCATTTTCATTGTGAGAATAAACTAATTTATAAAAGTCGAACAAATTTGAAAGCATACAAATGAAAATAAACTAATTAAGCTTATCATA
TAGCCACACTGTGCAAAACAACGGTTTCAATGGTAAGTCCAGGTCCAAAGCCAAACAACACACCCCAGTCAAGGCCTTCACCTGTGGTTTTAAGTCCCTC
TTGAGCCGATTTCTTTCTCATCTCATCCAAGATGAACAATACACATGCGCTTGACATGTTACCATATTCACTAAGTACTTCCCTAGTGGCCTTCATTTTT
TCAGGTTTTAAGCCTAACTTTTCTTCAACTTGGTCTAGAATTGCGGGTCCACCTGGGTGAGCAATCCAGAAGATTGAATTATAATCAGAGATGTTTAATG
GTTGGAAAGCCTCGACCAATGCTTTATCAATGTTCTTTGAAACAATCCCAGGAACATCTTTAAGAAGGTGAAATGTTAGACCAGCTTCACGAAGGTGACC
ATCAA