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Detailed information on CNT30145670


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SIF2|HS905_ARATH, E-value = 7e-16

BLAST vs NONCODE:
NONSTUT001022, E-value = 1e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Medicago truncatulaSetaria viridis37.3524.0984.21152forward
CNT30378101Medicago truncatulaArabidopsis thaliana29.2413.4989.08119forward
CNT3019808Medicago truncatulaCitrullus lanatus45.2127.4684.24184forward
CNT30729348Medicago truncatulaCorchorus capsularis41.7718.7884.12170forward
CNT30379140Medicago truncatulaManihot esculenta38.0818.4388.39155forward
CNT30526134Medicago truncatulaPhaseolus vulgaris50.3732.1886.83205forward
CNT30630919Medicago truncatulaVigna unguiculata46.1914.1188.3188forward
CNT30712340Medicago truncatulaGlycine max38.3327.1389.1156forward
CNT30636154Medicago truncatulaCapsicum annuum33.6629.6586.86137forward
CNT3094731Medicago truncatulaSolanum tuberosum46.6812.6686.84190forward
CNT30187977Medicago truncatulaSecale cereale42.5123.9686.13173forward
CNT30394033Medicago truncatulaTriticum turgidum42.5112.7986.71173forward
CNT30566784Medicago truncatulaActinidia chinensis48.425.9286.8197forward
CNT30510227Medicago truncatulaSolanum lycopersicum36.6112.7289.93149forward
CNT30314068Medicago truncatulaCamelina sativa36.129.787.76147forward
CNT3082269Medicago truncatulaBrassica juncea29.2418.3689.08119forward
CNT30606420Medicago truncatulaGossypium raimondii35.1425.0490.21143forward
CNT30625209Medicago truncatulaDaucus carota29.9818.0789.34122forward
CNT30688537Medicago truncatulaTriticum urartu18.1832.0387.8474forward
CNT30477326Medicago truncatulaArabidopsis halleri41.5219.1286.39169forward
CNT30362691Medicago truncatulaSorghum bicolor35.1414.4688.11143forward
CNT30704690Medicago truncatulaPrunus avium45.219.0686.96184forward
CNT30318584Medicago truncatulaAsparagus officinalis35.1411.7889.51143forward
CNT30551470Medicago truncatulaOryza brachyantha43.9841.1583.8179forward
CNT30113681Medicago truncatulaFicus carica41.7723.3584.12170forward

Expression of CNT30145670

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RRTYSLMLLGFFFVSKRSKGALLGTKRTALNSN*

>peptide 2 (36 aa)
ADIQLDVVGLLLCVKEIKRCSLGYKENSLKLQLTLN*

>peptide 3 (60 aa)
MLFPIIGETLVKSSILILCNLLGLPHPNRFLLVHQRPFIRHLLNLFLFLLFLFFLLIYFLN

Sequence

>CNT30145670
CGGCGGACATACAGCTTGATGTTGTTGGGCTTCTTCTTTGTGTCAAAGAGATCAAAAGGTGCTCTCTTGGGTACAAAGAGAACAGCCTTAAACTCCAACT
GACCCTCAACTGAGAAGTGCTTAACAGCCAAATGCTCTTCCCAATCATTGGTGCTCTCTTGGGTACAAAGAGAACAGCCTTAAACTCCAACTGACCCTCA
ACTGAGAAGTGCTTAACAGCCAAATGCTCTTCCCAATCATTGGTGAGACTCTTGTAAAAAGCAGCATACTCATCCTTTGTAATCTCCTCGGGCTTCCTCA
TCCAAATAGGTTTTTGCTTGTTCACCAAAGACCATTCATTAGACACCTCCTTAATCTTTTTCTTTTTCTTCTCTTCCTTTTCTTTCTCCTCATCTACTTC
CTCAACC