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Detailed information on CNT30145547


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMTRT002043, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532219Medicago truncatulaEucalyptus grandis76.9891.0883.811532forward
CNT30500348Medicago truncatulaCoffea canephora41.8655.3583.55833forward
CNT30401729Medicago truncatulaBeta vulgaris55.9381.2480.771113forward
CNT30629220Medicago truncatulaVigna unguiculata48.5989.5485.42967forward
CNT30156153Medicago truncatulaPistacia vera43.0774.3984.25857forward
CNT30637282Medicago truncatulaCapsicum annuum69.2569.9881.711378forward
CNT3097927Medicago truncatulaSolanum tuberosum65.2397.6782.511298forward
CNT3073617Medicago truncatulaBrassica juncea56.0333.0181.431115forward
CNT30605389Medicago truncatulaGossypium raimondii44.3289.4583.67882forward
CNT30704854Medicago truncatulaPrunus avium66.1873.8682.991317forward
CNT3028051Medicago truncatulaTheobroma cacao54.0788.2784.21076forward
CNT30120672Medicago truncatulaCitrus clementina77.5984.779.991544forward
CNT30334105Medicago truncatulaCynara cardunculus68.6957.9779.741367forward

Expression of CNT30145547

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSNVMVFPVKVFTKICMPPLKRRTR*

>peptide 2 (60 aa)
MEGGLLLDVIISKGTPILQLLASKNQTLLVWRDPFFVLNLGLNIVNCIGALHLKGDCLSCE

>peptide 3 (61 aa)
MSLCWSGGIPSLSCILALTLSMVSELSTSRVIVFPVRVFTNICIPPRRRSTKWRVDSFWML*

>peptide 4 (29 aa)
MSCHLQAAFQQKSTFAGLGGYPPCPVSWP*

Sequence

>CNT30145547
TGATACGAGAGCAAATAGTTCCCATTCATTAAGTAAAAAACTAGAACAGAATCATACACAAGAAATAAAACGATAGTTTTCCAGGGCCATTACGGACCCG
TTAGGGCCACAAGTTCTAAAACATAAAACTAACAACTGTAGAAGTTCAACACATGATAAGAGCTAAGCAACATTCACATTCTTAAAATCCACCACGAAGA
CGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGAT
CTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATTATCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTT
CACAAAGATCTGCATACCTCCCCTCAGACGAAGGACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCGGCCAAAGTCCGGCCATCTTCAAGCTGC
TTCCCAGCAAAGATCAACCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGTATTTTTGCCTTAACATTATCAATGGTGTCTGAGCTTTCCACCTCCA
ATGTAATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCATGCCTCCCCTCAAACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATC
AGCCAATGTCCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGTATCTTGGCCTTGACATTA
TCAATAGTGTCCGAGCTCTCTACCTCCAAAGTAATTGTTTTGCCTGTGAGTGTCTTAACAAAAATCTGCATACCACCGCGAAGACGCAAGACAAGGTGAA
GAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCCTC
CTTGTCCTGAATCTTAGCCTTTACATTGTCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACAAAAATCTGCATA
CCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATGA
GCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTGTCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCC
TGTAAGGGTCTTTACAAAAATCTGCATACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCA
TCTTCAAGCTGTTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTGTCAATCGTGTCCGAGC
TCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACAAAAATCTGCATACCACCACGAAGACGCAAGACAAGATGAAGAGTTGACTCTTTCTG
GATGTTATAATCGGCCAATGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGTATCTTG
GCCTTAACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCTTCACAAATATTTGCATACCACCACGAAGACGGA
GCACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCTATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGG
AGGGATCCCTTCTTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCTGTGAG