« Back to Medicago truncatula search


Detailed information on CNT30145540


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMTRT002043, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406246Medicago truncatulaBeta vulgaris77.7598.9684.04664forward

Expression of CNT30145540

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SKGPSILQLLPSKDQPLLIWGDSLLVLDFCLDIIDSV*

>peptide 2 (44 aa)
MPSLSRILAFTLSIVSELSTSKVIVFPVRVLTKICIPPRSRKTR*

>peptide 3 (79 aa)
MKSRLFLDIIISQSSTVFKLLSSKNQPLLVWGNTLLVLYLGLHIVNCVRALYLQSNCLASKSLHKNLHTTTKTQDKVKS*

>peptide 4 (55 aa)
MSSQRSAYLPSDEGQDEGLIPSGCYNLTRSFHLQAAFQQKSTFAGLEECPPCPES*

>peptide 5 (30 aa)
QGSFHPPIASQQRSTSADLGGFPPCPGFLP*

Sequence

>CNT30145540
AGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATTTTTGCCTTGACATTA
TCGATAGTGTCTGAACTTTCCACCTCTAAGGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCATACCTCCCCTCAGACGAAGGACAAGATGAA
GGGTTGATTCCTTCTGGATGTTATAATCTGACAAGGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTC
CTTGTCCAGAATCTTAGCCTTTACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTAATCGTTTTTCCAGTTAGGGTCTTAACAAAAATCTGCATA
CCACCACGAAGCCGCAAGACAAGATGAAGAGTCGACTCTTTCTGGATATTATAATCAGCCAGAGTTCGACCGTCTTCAAGTTGCTTTCCAGCAAAAATCA
ACCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCCGAGCTCTCTACCTCCAAAGTAATTGTCTTGCC
AGTAAGAGTCTTCACAAAAATCTGCATACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCA
TCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCTATGGTATCTGAAC
TCTCAACTTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCA