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Detailed information on CNT30145478


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531529Medicago truncatulaEucalyptus grandis27.9333.8185.71119forward
CNT30401917Medicago truncatulaBeta vulgaris39.6740.7281.66169forward
CNT30194604Medicago truncatulaPisum sativum26.0629.8484.68111forward
CNT30709031Medicago truncatulaGlycine max48.5919.988.89207forward
CNT30441068Medicago truncatulaAegilops tauschii30.7526.5281.68131forward
CNT3075659Medicago truncatulaBrassica juncea34.0440.1782.07145forward
CNT30262753Medicago truncatulaBrassica rapa34.0416.7282.76145forward
CNT30352560Medicago truncatulaEragrostis tef25.3519.6786.11108forward

Expression of CNT30145478

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VKVVLIRVIIGKKVINVVLKSEMSQDSWDYIFLQMAPLL*

>peptide 2 (61 aa)
MRTLEKSIANLASNIANSARSMWNEHSRRLGGSTNFFHSVKVLSDKDHIHDIFCSRPWYIN*

Sequence

>CNT30145478
GGTGAAAGTAGTATTAATTAGAGTTATAATTGGAAAAAAAGTAATTAATGTTGTATTGAAAAGTGAAATGAGTCAAGATTCTTGGGACTATATTTTTTTA
CAAATGGCTCCGTTATTATAGGATGGAGGGAGTATATCATACTGCAGAGACATAAAACATTAAAAAATCACAACACTTCCATACAAATCAGATATGAAGT
GGGAGGAATAGAAGCTACTGATGAGAACCCTGGAGAAGTCCATCGCGAATTTGGCTAGCAACATCGCGAACAGCGCCAGGTCCATGTGGAATGAACACAG
CAGAAGACTTGGAGGCAGCACCAATTTCTTTCATAGTGTCAAAGTATTGAGTGACAAGGACCATATCCATGACATCTTTTGCAGTCGTCCCTGGTACATT
AACTGAAAATCCAATCACACTGTCTC