« Back to Medicago truncatula search


Detailed information on CNT30145403


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBU3|PSBA_LOTJA, E-value = 6e-55

BLAST vs NONCODE:
NONMTRT000175, E-value = 4e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378683Medicago truncatulaArabidopsis thaliana94.4231.6394.88254forward
CNT30198744Medicago truncatulaPisum sativum95.5470.697.28257forward
CNT30487752Medicago truncatulaOlea europaea24.915.0888.0667reverse complement
CNT30391503Medicago truncatulaTriticum turgidum60.5932.693.25163forward
CNT3089384Medicago truncatulaVigna radiata94.4231.2895.67254forward
CNT30555706Medicago truncatulaOryza glaberrima93.3136.6492.83251forward
CNT30626343Medicago truncatulaDaucus carota95.9163.3994.57258forward
CNT30360185Medicago truncatulaLactuca sativa94.0535.2996.05253forward
CNT3058321Medicago truncatulaAmborella trichopoda94.4232.493.31254forward
CNT30102095Medicago truncatulaOryza rufipogon33.4638.4692.2290forward

Expression of CNT30145403

Peptides detected in this lncRNA

>peptide 1 (30 aa)
QIPTTGQAARKKCKERELLKLAYWKINRPK*

>peptide 2 (42 aa)
MSSYNIIGFFLLTESVTFISRFIFCGFPDQTRSYQGTVHSTK*

Sequence

>CNT30145403
CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAG
CAGCTACAATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAA
GGAACCGTGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCTAACATTTTCCTGAGTGT