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Detailed information on CNT30145240


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Medicago truncatulaOryza sativa30.583.0191.76170forward
CNT30678565Medicago truncatulaSetaria viridis22.8413.8391.34127forward
CNT30535895Medicago truncatulaEucalyptus grandis22.1222.286.99123forward
CNT30703171Medicago truncatulaQuercus lobata43.882.0589.34244forward
CNT30282912Medicago truncatulaChenopodium quinoa39.2120.3491.74218forward
CNT30632292Medicago truncatulaVigna unguiculata28.65.389.94159forward
CNT30202122Medicago truncatulaPisum sativum9.8923.7190.9155reverse complement
CNT30505351Medicago truncatulaNicotiana attenuata30.944.9594.77172forward
CNT30291829Medicago truncatulaTriticum aestivum30.584.3191.76170forward
CNT30222903Medicago truncatulaHordeum vulgare12.5924.5692.8670forward
CNT30541474Medicago truncatulaBrassica napus39.397.1688.58219forward
CNT30511193Medicago truncatulaSolanum lycopersicum26.628.3591.89148forward
CNT30554216Medicago truncatulaOryza glaberrima30.5826.0791.76170forward
CNT30660677Medicago truncatulaTriticum dicoccoides30.5812.7492.94170forward
CNT30598585Medicago truncatulaFraxinus excelsior36.8724.0390.73205forward
CNT3017990Medicago truncatulaZea mays37.776.3588.1210forward
CNT30205079Medicago truncatulaHelianthus annuus44.634.388.31248forward
CNT30621081Medicago truncatulaCajanus cajan51.6227.4992.68287forward
CNT30409854Medicago truncatulaPapaver somniferum36.8730.9291.22205forward
CNT30121210Medicago truncatulaCitrus clementina38.675.5289.3215forward
CNT30551824Medicago truncatulaOryza brachyantha10.2523.3691.2357forward

Expression of CNT30145240

Peptides detected in this lncRNA

>peptide 1 (68 aa)
AFSSCSTAASRSSSEFRIVLKILCFRLSNKSLNTPFPKKINTPSTTLRFIRFVAKISVSNPKLPADGQ*

Sequence

>CNT30145240
GCTTTCTCCAGCTGTTCAACGGCTGCTTCCCGTAGTTCTTCTGAATTTCGAATAGTTCTCAAGATTCTCTGTTTTCGATTATCTAATAAATCACTTAACA
CTCCCTTTCCAAAAAAAATTAATACACCTAGCACTACACTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATCAAACCCGAAACTTCCGGCGGATGG
CCAGTAAATGAAGCAAAGAAAAGAATCGGTTATATTTTTCATATGATCGCATCTCCTCTTATGGATAGACTAATTTTGTTTCTACGATTCCCAGTTTTTT
GATTTTTTTATTCGTTTTTTTATATTAAATTCAAGTTTATTGTATAATATTTTTATTTCTTACTAATAATAATAATTAATTAACTAATAATTAATTAATA
TGAATTACTAATAAGAATCTGAATAGAATAAGAATTTTATTGTATCTATTAGAGAATATAGAATATATTTATTAATAAATATATTCTATATTTTGAATTG
GTTAGTCAATTGAAAGATTCCTCATAAGAATGATACCTCTTAGAAGTAGATACTAG