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Detailed information on CNT30144739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639595Medicago truncatulaNymphaea colorata22.6322.2590.48105forward
CNT30628366Medicago truncatulaVigna unguiculata32.5410.5780.13151forward
CNT3096327Medicago truncatulaSolanum tuberosum56.2532.8380.46261forward
CNT30221496Medicago truncatulaHordeum vulgare17.8941.2984.3483forward
CNT30587418Medicago truncatulaMusa acuminata38.3623.4587.08178forward
CNT3084173Medicago truncatulaVigna radiata29.5319.6882.48137forward
CNT30511017Medicago truncatulaSolanum lycopersicum37.2829.0381.5173forward
CNT30312478Medicago truncatulaCamelina sativa22.4142.6285.58104forward
CNT30611972Medicago truncatulaArabis alpina19.8338.6689.1392forward
CNT308389Medicago truncatulaZea mays16.3834.8688.1676forward
CNT30354796Medicago truncatulaLactuca sativa20.9118.4484.5497forward
CNT30570586Medicago truncatulaVitis vinifera36.4224.4982.84169forward
CNT30645006Medicago truncatulaCannabis sativa53.0229.8985.37246forward
CNT3021984Medicago truncatulaPopulus trichocarpa48.9210.6184.58227forward
CNT30329937Medicago truncatulaDioscorea rotundata23.4910.5283.49109forward
CNT3065844Medicago truncatulaSelaginella moellendorffii19.1825.585.3989forward

Expression of CNT30144739

Peptides detected in this lncRNA

>peptide 1 (57 aa)
TSCLHLVKPLNTSGSFFRNTNNSSLHLLVPLRISLQTISDNGKNNLHLSIISGRRIR*

>peptide 2 (65 aa)
MDQESDITTIINDKICTTNTPGESLLSMRTRRRCHERWRQRRGLEWRRCCRNTNGLQRRERLGFR*

Sequence

>CNT30144739
ACCAGTTGCTTGCATCTGGTAAAGCCTCTTAACACCAGTGGTAGTTTCTTCAGAAACACCAACAATTCTAGTCTTCATCTTCTGGTACCTCTTAGGATCA
GTCTTCAAACCATCTCTGATAATGGTAAGAACAATCTGCATCTCAGCATTATCAGTGGAAGAAGGATCAGGTAACTGACCAGTCTTCTCAAAAACCTCTT
CAGCCTTAACACCTTCATGGATCAAGAGAGTGACATCACCACCATCATCAACGATAAGATCTGCACCACCAATACTCCTGGAGAGTCTCTCCTTTCCATG
CGAACACGGCGGCGCTGTCACGAGCGATGGCGGCAGCGGCGTGGTCTTGAGTGGAGAAGATGTTGCAGGAACACCAACGGACTTCAGCGCCGAGAGCGGT
TAGGGTTTCGATGAGGACGGCGGTTTGGATTGTCATGTGAAGTGAACCGGTTATTCTAGCGCCT