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Detailed information on CNT30144666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534974Medicago truncatulaEucalyptus grandis7.7330.4586.4974reverse complement

Expression of CNT30144666

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MIKIVYLDSCAPFVLIERECVIWFLIARNSYTCLDFIIYEYFFPLRYEL*

>peptide 2 (86 aa)
ASGTGTGCIYIPFPSLIFHIYCFTFLSLSLYRKLKQTPFSHLLQWPTSSLMIRSPSSRRPSASSIRMAMVSFLRFLFHSLFLSFFS*

>peptide 3 (89 aa)
LGYGYRVYIYSIPLSNFPHLLFYFSFSLSISQTQTNAFLSPPPMADQLTDDQIAEFKEAFSLFDKDGDGLFSQIPFSFSFSFIFFLDLV*

>peptide 4 (30 aa)
MVCTRETQQTRIYTASYMIIFCSDDMCLTIL

>peptide 5 (44 aa)
MSIFFHYGTNYEVSVSTVMYNGVYEGNPTNTYIYSFIHDYLLFR*

Sequence

>CNT30144666
GCCTCGGGTACGGGTACAGGGTGTATATATATTCCATTCCCCTCTCTAATTTTCCACATTTATTGTTTTACTTTTCTTTCTCTCTCTCTATATCGCAAAC
TCAAACAAACGCCTTTCTCTCACCTCCTCCAATGGCCGACCAGCTCACTGATGATCAGATCGCCGAGTTCAAGGAGGCCTTCAGCCTCTTCGATAAGGAT
GGCGATGGTCTCTTTTCTCAGATTCCTTTTTCATTCTCTTTTTCTTTCATTTTTTTCTTAGATCTAGTCTAGTTATTCATATTCTTTTTTTTTTTTTTGC
ATGTTTTGTTTATTGGTGATCTAGGTTTCCTTTCTTGATTGACTTTTCTTTTTGTGTTGAATTGTTGATTGCTATTGTTACCGAATTTTGTTTGATTCGT
GTGGCTTTTGATACCCTTCTGGATCGTAAGATTTTGAGCCTTTTTGAATTTTAATGTGAATTTTTTGATGATGAATTTTGTGCTAGATTTACTTATATTT
GAAATCTGTGTGTTGCTGTAATTTGGTTTCATGTAGGAAATTGATCGAGCATTATGCATCTCTGGTTGAAATCTAGGAATTAGGGTTAGTGTTATAAGTT
TATACCTCCCTATCATTATAGAAGACTTGTATATGATTGTGGTCATTATTCGGTAAAATCAGTTTTTAGAGTCTGAGTTCCGCAAAAAATGATAAAAATC
GTCTATCTCGATTCATGTGCGCCTTTTGTTTTGATTGAAAGGGAATGTGTTATTTGGTTTCTTATTGCTAGAAATTCTTATACATGTTTGGATTTTATTA
TTTATGAGTATTTTTTTCCATTACGGTACGAATTATGAGGTTTCTGTTTCTACCGTGATGTATAATGGTGTGTACGAGGGAAACCCAACAAACACGTATA
TATACAGCTTCATACATGATTATCTTTTGTTCCGATGACATGTGTTTAACTATTTTG