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Detailed information on CNT30143980


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315005Medicago truncatulaCorylus avellana35.297.7382.61138forward
CNT30515782Medicago truncatulaJuglans regia27.888.5682.57109forward
CNT30701990Medicago truncatulaQuercus lobata30.4320.3884.03119forward
CNT30711018Medicago truncatulaGlycine max90.7971.1486.2355forward
CNT3085819Medicago truncatulaVigna radiata88.7526.4781.84347forward
CNT30171034Medicago truncatulaTrifolium pratense49.6229.879.9194forward
CNT30652116Medicago truncatulaRosa chinensis41.1823.9980.75161forward
CNT30128098Medicago truncatulaCorymbia citriodora34.7843.0483.09136forward
CNT3026515Medicago truncatulaPopulus trichocarpa24.5522.3882.2996forward

Expression of CNT30143980

Peptides detected in this lncRNA

>peptide 1 (62 aa)
IGFGGISRLSTSPSSISTTLFIEGRSTGFNCIHQSATMIIFFTVFFSSSVTSSISISPSCPN*

>peptide 2 (38 aa)
GLALEAFQGFQHLLRASPLPCSLRGDQLVSTVYTKVRL*

Sequence

>CNT30143980
GGATTGGCTTTGGAGGCATTTCAAGGCTTTCAACATCTCCTTCGAGCATCTCCACTACCTTGTTCATTGAGGGGCGATCAACTGGTTTCAACTGTATACA
CCAAAGTGCGACTATGATCATCTTCTTTACTGTTTTCTTTTCCTCCTCTGTGACATCTTCTATTTCTATTTCTCCTTCTTGTCCAAATTGATCATAAATC
CATAAAGGAAAATAAAGCTGACTTGAATGCTCCGCTTGGGCATTTAGGTTTTTCCTTTTACCTGCCATCTCCATCAAAAGCATCCCAAAGCTATAAACAT
CAGCCTTATAAGACACTCCCCCAATATTTTTATAGAACAATTCTGGAGCCATATATCCAATGGTACCTCTTGCCGCAGTCATTGTGACAAT