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Detailed information on CNT30143941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Medicago truncatulaSetaria viridis32.3769.7185.52145forward
CNT30532843Medicago truncatulaEucalyptus grandis47.9929.3780.93215forward
CNT30316236Medicago truncatulaCorylus avellana39.2938.3484.09176forward
CNT30513000Medicago truncatulaJuglans regia58.7152.683.65263forward
CNT30276060Medicago truncatulaChenopodium quinoa20.9814.8386.1794forward
CNT3019597Medicago truncatulaCitrullus lanatus52.6831.5583.05236forward
CNT30405820Medicago truncatulaBeta vulgaris51.3443.4883.48230forward
CNT30711584Medicago truncatulaGlycine max54.9134.9487.4246forward
CNT3045373Medicago truncatulaPrunus dulcis59.634.0683.15267forward
CNT30300473Medicago truncatulaTriticum aestivum56.726.2479.53254forward
CNT30561658Medicago truncatulaActinidia chinensis60.2723.0880.37270forward
CNT3085191Medicago truncatulaVigna radiata59.637.2485.77267forward
CNT30510505Medicago truncatulaSolanum lycopersicum40.8516.8581.97183forward
CNT30552635Medicago truncatulaOryza glaberrima54.0223.3183.47242forward
CNT30441158Medicago truncatulaAegilops tauschii56.733.4779.92254forward
CNT30313706Medicago truncatulaCamelina sativa31.9243.8781.12143forward
CNT3059659Medicago truncatulaArabidopsis lyrata31.9232.9581.82143forward
CNT3014085Medicago truncatulaZea mays54.0239.6783.47242forward
CNT30203835Medicago truncatulaHelianthus annuus38.6236.0481.5173forward
CNT30722731Medicago truncatulaTriticum spelta34.630.3380.65155forward
CNT30345702Medicago truncatulaEragrostis tef58.7132.5582.13263forward
CNT30361520Medicago truncatulaSorghum bicolor58.7138.4585.17263forward
CNT30596064Medicago truncatulaOryza meridionalis54.0247.2783.06242forward
CNT30369654Medicago truncatulaOryza glumipatula47.9924.4383.26215forward
CNT30154011Medicago truncatulaPrunus persica16.5226.3387.8474forward
CNT30107537Medicago truncatulaOryza longistaminata54.0226.3383.06242forward
CNT30332479Medicago truncatulaDioscorea rotundata18.5329.3390.3683forward
CNT30100253Medicago truncatulaOryza rufipogon54.0221.9683.47242forward
CNT30575129Medicago truncatulaOryza barthii54.0229.7383.47242forward
CNT30116094Medicago truncatulaOryza nivara54.0227.583.47242forward
CNT3050899Medicago truncatulaCucumis sativus31.9256.7583.22143forward

Expression of CNT30143941

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIKDTLGESLPRCCSSQLTGKSKGLNDREVCFDVVKWGTGPLHFFKNTRSR

>peptide 2 (54 aa)
FNTNSKTLFYINANATDQKYIDAKINNSKVHNKTRDKATVFITAKYININKLQK*

Sequence

>CNT30143941
TTCAACACAAACAGTAAAACTCTATTCTACATCAATGCAAATGCTACAGACCAAAAATACATCGATGCAAAGATAAATAATTCAAAAGTACACAACAAAA
CTCGAGATAAGGCAACAGTTTTCATAACAGCCAAGTACATAAATATAAATAAATTGCAGAAATAACTTAAAGCTTGTCTTCAAACTCAGAGAGGGGAGTC
ATTTGCTCCTTGAGTCCCTTCCTCTTGCGGATGTCCGTCACAAGCTGTGCAGCTTGTGATCCAGCTTCCAAAGGATCTGAGGTCATGGTGTCCCAATGAT
CAAAGACACACTGGGGGAAAGCCTGCCCAGATGTTGCAGCTCTCAACTGACTGGAAAATCCAAAGGACTCAATGACAGGGAGGTATGCTTTGATGTTGTA
AAGTGGGGTACCGGGCCTCTGCATTTCTTCAAAAACACGAGAAGTCGA