« Back to Medicago truncatula search


Detailed information on CNT30143836


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Medicago truncatulaSetaria italica27.121.0782.91158forward
CNT30703138Medicago truncatulaQuercus lobata63.6470.882.75371forward
CNT30375121Medicago truncatulaArabidopsis thaliana33.2826.5485.05194forward
CNT30268105Medicago truncatulaChenopodium quinoa70.8449.2385.47413forward
CNT3021247Medicago truncatulaCitrullus lanatus63.9840.584.45373forward
CNT30729539Medicago truncatulaCorchorus capsularis75.8165.7781.9442forward
CNT3068683Medicago truncatulaQuercus suber74.6188.4181.38435forward
CNT30524728Medicago truncatulaPhaseolus vulgaris74.18081.94432forward
CNT30486152Medicago truncatulaOlea europaea40.4826.0883.47236forward
CNT30506399Medicago truncatulaNicotiana attenuata54.8996.6884.69320forward
CNT30710642Medicago truncatulaGlycine max21.7813.5885.83127forward
CNT3098150Medicago truncatulaSolanum tuberosum67.4180.281.68393forward
CNT3084565Medicago truncatulaVigna radiata69.4723.9681.23405forward
CNT30539234Medicago truncatulaBrassica napus66.942.6282.56390forward
CNT30244810Medicago truncatulaAvena sativa27.119.5582.28158forward
CNT30261302Medicago truncatulaBrassica rapa65.6974.0882.77383forward
CNT30447453Medicago truncatulaSaccharum spontaneum27.127.5782.91158forward
CNT30134072Medicago truncatulaLolium perenne27.121.7683.54158forward
CNT30653881Medicago truncatulaRosa chinensis53.8629.480.89314forward
CNT30718631Medicago truncatulaMalus domestica golden39.1139.7284.21228forward
CNT30343308Medicago truncatulaEragrostis tef27.157.6682.91158forward
CNT30477892Medicago truncatulaArabidopsis halleri67.7536.9281.77395forward
CNT30359656Medicago truncatulaLactuca sativa68.4423.6182.71399forward
CNT30425316Medicago truncatulaPapaver somniferum63.9877.3984.45373forward
CNT30645151Medicago truncatulaCannabis sativa63.8139.0382.26372forward
CNT30105598Medicago truncatulaOryza longistaminata27.6223.3780.75161forward
CNT30579496Medicago truncatulaEchinochloa crusgalli25.3937.8582.43148forward
CNT30499107Medicago truncatulaDigitaria exilis27.140.4181.65158forward
CNT30603529Medicago truncatulaOryza punctata30.3623.1481.92177forward
CNT30550386Medicago truncatulaOryza brachyantha21.4445.4583.2125forward
CNT30332943Medicago truncatulaCynara cardunculus68.4476.5883.46399forward
CNT30726386Medicago truncatulaLupinus angustifolius76.6749.7284.34447forward
CNT3064271Medicago truncatulaSelaginella moellendorffii33.2835.2779.38194forward

Expression of CNT30143836

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGPNESRSTSHHDPQPLPFYPQRNLPGRMNHRGGALLIHCRCGL*

>peptide 2 (63 aa)
MNRRSRTSKMIDLINFKKKRLNDVVSNKLKSRITKMMHNVLFSTGEEIINNNHTIPSRHQPIH*

Sequence

>CNT30143836
CACCAATTGGATTAACGTTTCCCCAGTAAGTCTCCTTCTGAGGATGCTCCAGAGGATCACCATAAACCTCACTTGTACTTGTTAGCAAGAATCTAGCTCC
AACTCTTTTCGCCAATCCAAGCATGTTCAATGTTCCGACCACATTCGATATGATAGTTTTGACGGGGTTGAACTTGTAATGAACAGGAGAAGCAGGACAA
GCAAGATGATAGATCTGATCAACTTCAAGAAGAAGAGGCTCAACGACGTCGTGTCGAATAAGCTCAAATCTCGGATTACCAAAATGATGCATAACGTTCT
CTTTTCTACCGGTGAAGAAATTATCAACAACAATCACACTATCCCCTCTCGCCATCAACCGATCCACTAGATGGGACCCAACGAATCCCGCTCCACCAGT
CACCACGATCCGCAGCCCCTTCCTTTTTATCCCCAACGGAATCTTCCCGGACGAATGAACCACCGAGGCGGCGCGTTGCTTATACACTGCAGGTGTGGTC
TTTGACTCGCGGTCGAAGTACGAGATCGAGTCTGATTCGTATGGACGGGTTGAGAATGAGGAGGATGAAGAAGTTGAAGATGA