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Detailed information on CNT30143812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 6e-115

BLAST vs NONCODE:
NONBNAT004786, E-value = 3e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Medicago truncatulaCorylus avellana18.4348.6183.33228forward
CNT30500451Medicago truncatulaCoffea canephora21.4224.8483.77265forward
CNT30727603Medicago truncatulaCorchorus capsularis32.7481.9883.21405forward
CNT30630546Medicago truncatulaVigna unguiculata12.0522.5182.55149forward
CNT30504810Medicago truncatulaNicotiana attenuata32.0960.9882.37397forward
CNT30637312Medicago truncatulaCapsicum annuum33.8797.4481.62419forward
CNT30182233Medicago truncatulaSecale cereale13.526.8582.04167forward
CNT30222279Medicago truncatulaHordeum vulgare12.9352.9881.88160forward
CNT30590847Medicago truncatulaMusa acuminata9.6226.0484.87119forward
CNT30457014Medicago truncatulaSaccharum spontaneum13.521.8683.23167forward
CNT3066796Medicago truncatulaLeersia perrieri13.2642.1685.98164forward
CNT30338563Medicago truncatulaEragrostis tef17.351.6980.84214forward
CNT30595456Medicago truncatulaOryza meridionalis14.0730.5382.18174forward
CNT30355562Medicago truncatulaLactuca sativa23.8550.682.71295forward
CNT3054595Medicago truncatulaAmborella trichopoda13.9983.5782.08173forward
CNT30325711Medicago truncatulaAsparagus officinalis23.289.9781.88287forward
CNT30580107Medicago truncatulaEchinochloa crusgalli13.532.1883.23167forward
CNT30497454Medicago truncatulaDigitaria exilis13.0243.2883.85161forward
CNT30594668Medicago truncatulaEragrostis curvula13.148.0784.57162forward
CNT30174824Medicago truncatulaVigna angularis22.8829.7984.45283forward
CNT30336663Medicago truncatulaCynara cardunculus30.4880.7381.96377forward
CNT30723923Medicago truncatulaLupinus angustifolius16.5710089.76205forward

Expression of CNT30143812

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QFINSLTNWINIPPVSLFLRMLQRITIYLTSTS*

>peptide 2 (73 aa)
MNQILFPTSKKIINNNNIIPSTNQLINQMTSNKTSTTGNHHSQPPTTNSRRNPPHSKGCTLVAGVEPDQPRSR*

>peptide 3 (38 aa)
MVEFRFPFLLLFCDSSFVACVTVSFFSSFAFAVEVIEC*

>peptide 4 (46 aa)
MLKIFIIKCRIYIFLKIIKSRIYCVLFCFFYMQKCYKGDAVVAVVN*

Sequence

>CNT30143812
TTCAGTTTATAAACTCACTCACCAATTGGATTAACATTCCCCCAGTAAGTCTCTTTCTGAGGATGCTCCAAAGGATCACCATATACCTCACTAGTACTAG
TTAAAAGAAACCTCGCCCCAATTCTCTTTGCTAGCCCCAACATATTAAGTGTACCCATCACATTTGATATGATTGTCTTGATAGGGTTATACTTATAATG
AACAGGTGAAGCAGGACAGGCAAGATGATAGATCTGATCAACCTCAAGCAAAATCGGATCAACAACATCATGACGAATTAACTCAAACCTAGGGTTCCCA
AACAAATGAACCAAATTCTCTTTCCTACCAGTAAAAAAATTATCAATAACAATAACATCATTCCCTCTACCAATCAACTTATCAACCAGATGACTTCCAA
CAAAACCAGCACCACCGGTAACCACCACTCTCAACCTCCGACCACCAATTCCCGCCGGAATCCGCCCCACTCTAAGGGATGCACCCTCGTTGCCGGTGTT
GAACCGGACCAACCCAGATCTAGGTAAAAACAAACCGGCCTCCGGTGGACTTATGCGTGAAAGCGTGGGTTGAATGATGAAGAAAGTTGAACCGATCAAA
ATTCCGACGAGGATGAAGAGAAGACGTTGTTCTCGTAAGAGGTAGTTGATCGATCTGGGGAGGGTTCGTGTGTGCTTCATTGATTTTGGTGAGTATGGTG
GAGTTTCGCTTCCCATTTCTTCTTCTCTTCTGTGATTCAAGCTTTGTTGCTTGTGTAACTGTTTCATTTTTTTCTTCTTTCGCTTTCGCAGTTGAAGTTA
TAGAATGTTGAAAATATTTATTATTAAATGCAGAATTTATATTTTTTTGAAAATAATTAAAAGCAGAATTTATTGTGTCCTTTTTTGTTTTTTTTACATG
CAAAAATGTTATAAAGGCGATGCAGTAGTAGCGGTGGTTAATTAGAAAACACTCAACAGAAAACGTGAAAATGAAGGTAGAGGTGATTTTCAACGTGTAG
TGATGATAATTTTTCCTTTTCTTATTACATTTATTTAAGATAAAATAATGGAAAAAAAAAAAAAAAAAAAGTGATTGAATGAATAATTTGCGGTAAGTAG
TGTTCTATTTTTGGTCAGCACAAAAAGAAAGAAATGAGTTTATGGATGGGTAAAATATACTAATGGATTGATTACTAATGATTTGAAGAGTTGATATCTC
ACTCAACAAAAGTCACTTGGTTTTGTTGTTACGCAAG