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Detailed information on CNT30143750


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-87

BLAST vs NONCODE:
NONSLYT002586, E-value = 1e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Medicago truncatulaNymphaea colorata34.3338.2383.65263forward
CNT30547471Medicago truncatulaIpomoea triloba27.8139.3785.92213forward
CNT30513072Medicago truncatulaJuglans regia41.7877.2986.88320forward
CNT30371838Medicago truncatulaArabidopsis thaliana43.0825.0286.06330forward
CNT3019595Medicago truncatulaCitrullus lanatus20.6328.4781.65158forward
CNT30728649Medicago truncatulaCorchorus capsularis27.6819.4786.79212forward
CNT3071371Medicago truncatulaQuercus suber23.3762.3783.8179forward
CNT30405829Medicago truncatulaBeta vulgaris33.2930.8785.49255forward
CNT30636551Medicago truncatulaCapsicum annuum45.0452.2784.06345forward
CNT30192963Medicago truncatulaSecale cereale28.7241.282.27220forward
CNT30224842Medicago truncatulaHordeum vulgare51.8390.6482.62397forward
CNT30391299Medicago truncatulaTriticum turgidum24.413483.42187forward
CNT30561656Medicago truncatulaActinidia chinensis24.4113.3686.63187forward
CNT30510528Medicago truncatulaSolanum lycopersicum42.5625.3187.73326forward
CNT30441049Medicago truncatulaAegilops tauschii48.397.8882.97370forward
CNT30665536Medicago truncatulaTriticum dicoccoides34.9940.6782.09268forward
CNT30312884Medicago truncatulaCamelina sativa56.1442.5383.26430forward
CNT30263667Medicago truncatulaBrassica rapa54.4458.9883.93417forward
CNT30612508Medicago truncatulaArabis alpina53.9216.2784.02413forward
CNT30445994Medicago truncatulaSaccharum spontaneum31.3316.8584.58240forward
CNT301916Medicago truncatulaZea mays14.3627.0385.45110forward
CNT30210789Medicago truncatulaHelianthus annuus28.0759.3984.19215forward
CNT30716232Medicago truncatulaMalus domestica golden55.0931.8384.6422forward
CNT30683923Medicago truncatulaTriticum urartu22.3218.6983.04171forward
CNT30370118Medicago truncatulaOryza glumipatula34.8643.285.02267forward
CNT30705326Medicago truncatulaPrunus avium55.7433.2384.78427forward
CNT3054398Medicago truncatulaAmborella trichopoda30.8134.481.36236forward
CNT3024028Medicago truncatulaPopulus trichocarpa41.3842.985.17317forward
CNT30119815Medicago truncatulaCitrus clementina62.01103.4982.11475forward
CNT30575986Medicago truncatulaOryza barthii34.8622.6185.02267forward
CNT30557952Medicago truncatulaPanicum hallii22.0620.7481.07169forward

Expression of CNT30143750

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCSPDSSIVQTTIGSDLAKRLRPSTSLGRSEATLH*

>peptide 2 (45 aa)
VRFNNLSTTHEIILQVFQTDLKMKLSCTSNNVFSRLLNSTNNHRI*

Sequence

>CNT30143750
GGGTCAGATTTAATAATCTCAGCACCACCCATGAAATCATCCTGCAAGTCTTTCAAACAGATCTCAAGATGAAGCTCTCCTGCACCAGCAACAATGTGTT
CTCCAGACTCCTCAATAGTACAAACAACCATAGGATCTGACTTAGCCAAACGTTTGAGACCTTCAACAAGCTTGGGAAGATCTGAAGCGACCTTGCACTG
AACAGCAACACGCACAACAGGGGAGACGGAAAACTTCATAGCTCGGATAGGGTGGGCATCAACTTCCTTCTCATTTGTCAATGTAGCATTCTTTGTAATA
AATTGATCCAAACCAACCAAAGCAACAGTGTTACCACAAGGGGGCCCTCATACAAATTCTCAACACGGTACCTCTGGGCAGTTGATGGTGAGGGAAGATG
AAAGATCATCATTTCAAGTAGGGCAGTACTTGCAGGCAACCAGGTCTGCATAACACGTTTCATCAATGGCTTACCCATCAGGTCCTTCTCTTCAGACTTC
ATGGTGACCCCTAGCTTTGTAAGCATAGGCCACAACTTATCCTTCTGATCATTCATACAAGTGTTGATGATCTGCTTGATAGGCTCATAACAGAACTGAA
CAAACCCACGCTTGCAAGAAGCTGAACCAGTATTCTTGGTGGTCCATTTTTTTGTGGCAGGATCGAAGAAATTTTCACCCCAGAGCCTCTCCATCATCTT
GGACTCATCAACGCCAAATTTTGAGGCATACATTTTGGCAAAGTTGGTCAGAGTAAAAGCCCAACC