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Detailed information on CNT30143557


BLAST search results

BLAST vs Swiss-Prot:
sp|P30076|CHS8_MEDSA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379505Medicago truncatulaManihot esculenta15.7628.784.24165forward
CNT30628930Medicago truncatulaVigna unguiculata85.3976.0984.12894forward
CNT30195450Medicago truncatulaPisum sativum94.4684.8990.29989forward
CNT30156272Medicago truncatulaPistacia vera73.3549.8180.08768forward
CNT3096581Medicago truncatulaSolanum tuberosum22.7312.7480.67238forward
CNT30564019Medicago truncatulaActinidia chinensis29.9942.3878.34314forward
CNT3087878Medicago truncatulaVigna radiata91.9861.6183.49963forward
CNT30171320Medicago truncatulaTrifolium pratense40.8810093.22428forward
CNT3074040Medicago truncatulaBrassica juncea19.145.2579200forward
CNT30597791Medicago truncatulaFraxinus excelsior11.5640.4780.99121forward
CNT30610059Medicago truncatulaGossypium raimondii36.255.4981.27379forward
CNT30152294Medicago truncatulaPrunus persica23.2196.0579.01243forward
CNT3022840Medicago truncatulaPopulus trichocarpa43.3646.6179.52454forward
CNT30114123Medicago truncatulaFicus carica24.2615.8183.86254forward

Expression of CNT30143557

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MAFTAASFPSLGTSTTTMSCLASNEGAMYSQTLGFSFKISSVRYIYLLLIIDLSPEGNYEKMILVQQNLGV

>peptide 2 (63 aa)
MLVQLHEGDHQWLLHYLEQLFVQSKPSQILVSQFLVLDLNQQLVQQLHLQIGPVQQGCPSEYH*

>peptide 3 (49 aa)
MAPSLSGAIVCAVQTISNIGFSISGTGSEPTISAAAPSPNRACPTRLSK*

>peptide 4 (37 aa)
APHIATLRKTTVSMVRPGPKPNKTPNSSPSPVVFNPS*

Sequence

>CNT30143557
GCACCTCATATAGCGACACTGCGTAAAACAACAGTTTCAATGGTAAGACCCGGTCCAAAGCCAAATAAAACACCAAACTCAAGTCCTTCTCCCGTGGTCT
TCAATCCATCTTGAGCTGACTTCTTTCTCATTTCATCTAAGATAAACAAAACACAGGCACTTGACATATTTCCATATTCACTAAGCACTTCTCTGGTGGC
TTTCATCTTTTCAGGTTTTAAGGCTAACTTTTGCTCAACTTGATCTAGAATTGCAGGTCCACCAGGGTGTGCAATCCAAAAGATTGAATTGTAATCAGAA
ATTCCTAATGGTTCGAAAGCCTCAACCAATGCTTTATTGATGTTCTTTGAAACAATCCCAGGAACATCTTTAAGAAGGTGAAATGTTAGTCCAGCTTCAC
GAAGGTGACCATCAATGGCTCCTTCACTATCTGGAGCAATTGTTTGTGCAGTCCAAACCATCTCAAATATTGGTTTCTCAATTTCTGGTACTGGATCTGA
ACCAACAATTAGTGCAGCAGCTCCATCTCCAAATAGGGCCTGTCCAACAAGGCTGTCCAAGTGAGTATCACTAGGGCCGCGAAATGTGACTGCAGTGACT
TCAGAACAGACAACCAACACACGAGCACCTTTGTTGTTTTCAGCTAAATCTTTAGCCAAACGAAGGACCGTGCCTCCTGCAAAGCAACCTTGTTGGTACA
TCATATACCTTTTCACATATGGGCGAAGACCTAAGAGTTTTGTGAGTTGGTAATCAGCTCCAGGCATGTCTACACCACTTGTGGTGCAAACGATCAAGTG
AGTAATCTTTGACTTTGGTTGACCCCATTCTTTTATGGCCTTCACTGCAGCCTCCTTCCCTAGTCTAGGTACCTCTACCACCACCATGTCTTGCCTAGCA
TCCAATGAAGGTGCCATGTATTCACAAACACTAGGATTCTCTTTCAAAATCTCCTCTGTTAGGTACATATATCTCCTCTTGATCATAGATTTATCACCTG
AAGGGAATTATGAAAAGATGATATTAGTTCAACAAAACTTGGGTGTT