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Detailed information on CNT30143507


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XZL0|MT2C_ORYSI, E-value = 8e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286278Lolium perenneTriticum aestivum9.4420.2193.2259forward
CNT30255044Lolium perenneAvena sativa21.7631.7894.85136forward

Expression of CNT30143507

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTMTAAPAVASTSGNILQLHTQNQIPPQSIYSASTRIKKLL*

>peptide 2 (56 aa)
MKRSNSGMRFVQAAVLHYVPAAAAAALAAGAAPALAAAARHSPSESGGDATEEVRR*

Sequence

>CNT30143507
GATGGATCAAAGTTGAGGCGCATATATTAAGCCTGGAGTCATGAGGGAGGACATGGATGGATCGATCATGGCGACAGACGCGAGACTCACGTAGTACAGA
ATTAAGGAACACGGTGCTTATTTTATTTAGCAGCAGCTAGTGAGACACGCTGCTGGGTGTGGCGGTGGTGCAGTCGCAGCCGCCGGCCTCCCCGGCCATC
TCGAACCCGCCGGAGGTGGCCTTGTGGGCGGCGGTGGGCATGACCATGACGGCGGCGCCGGCGGTAGCCTCAACATCGGGGAACATCTTGCAGCTACACA
CGCAAAATCAAATTCCACCACAGTCAATTTACTCAGCGTCTACCCGGATAAAGAAACTACTATGAAACGTTCAAATTCAGGCATGCGGTTTGTTCAAGCG
GCAGTGCTGCACTACGTACCCGCCGCAGCCGCTGCCGCACTGGCAGCCGGCGCCGCACCCGCACTTGCCGCTGCAGCAAGACATTCTCCTTCCGAGAGTG
GTGGTGATGCTACTGAAGAAGTGAGGAGGTAGCTAGCTCAGAGATGGATGCTTGCTGTGGCTTGGTGAGGAGGAAGAAGGCGGGCAAGGGGCCTATAAAT
AGGCGGGGAGTGGGCGGCAAAGGAT