Detailed information on CNT30143360


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Lolium perenneOryza sativa8.3820.0585.1474forward
CNT30225098Lolium perenneHordeum vulgare12.3439.2189.91109forward
CNT30253461Lolium perenneAvena sativa29.2230.0787.98258forward
CNT30667276Lolium perenneTriticum dicoccoides12.9121.3990.35114forward
CNT30686240Lolium perenneTriticum urartu12.3423.789.91109forward
CNT30722257Lolium perenneTriticum spelta12.3429.389.91109forward
CNT30584129Lolium perenneEchinochloa crusgalli13.0226.8783.48115forward

Expression of CNT30143360

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MDSPVKVMYSRRTMAPMKCACLDIVQLVQSVYHLLFKRRVDQTARHKSWRDGRIQWRPACS*

>peptide 2 (56 aa)
MLHTVLSISIQQDGLTGEGNVLAPHYGTDEMCMSGYSSTRPKRIPSSFQKEGRPNC*

>peptide 3 (48 aa)
ATSSALNRGKGAVFTPRTTSPSMCVITYIGVPVHLISPLPFALLQCHS*

>peptide 4 (38 aa)
MLFLLLRLLLQHPGLDLLCLKPMLLLAGVPLLLAAGSA*

>peptide 5 (41 aa)
MDPPTAQSMSATEDFQDKSLDGCCSCCYDCCSNILDWICCV*

Sequence

>CNT30143360
AGCTACTAGTAGTGCCTTAAATCGCGGCAAAGGAGCTGTCTTTACACCGCGCACCACCTCCCCTTCCATGTGCGTCATCACTTATATTGGCGTTCCCGTC
CATCTCATCTCGCCTCTGCCCTTTGCCTTGCTCCAGTGTCACTCCTAACTAATCCCAAGTCCGTCGCTGCCTTCTTCCCCACATCATCGTCTTCTTGGGA
CTCCGTCCGTCCACGGGAGGAGAGAGGCCTGGCCATGGATCCCCCGACCGCCCAGTCCATGTCCGCGACCGAAGACTTCCAGGACAAGAGCCTGGACGGA
TGCTGTTCCTGCTGCTACGACTGCTGCTCCAACATCCTGGACTGGATCTGCTGTGTTTGAAACCGATGCTGCTTCTCGCCGGCGTCCCACTCCTTCTGGC
CGCCGGAAGCGCGTGAGTTACGCCGGGGTCTCTACATGTTACGCAGGTTTTGGATGTTCCTTTTTAAAACGAGGCCTTTGGAGTAATCTGTAATCTGAAT
CTCTAATGAACTTCATTAGGCAGCAAAGGCAATTTGGGGACCAATTGCCGGAATGTTGACTTATCTTCCGCTACAAAAGAGTATATATGCAGTAAGGCTA
CGAGTTTATTAGTCTTGATCCTAATTAAGTACCCATGCTTCATACGGTGTTGTCCATCAGCATTCAGCAAGATGGACTCACCGGTGAAGGTAATGTACTC
GCGCCGCACTATGGCACCGATGAAATGTGCATGTCTGGATATAGTTCAACTCGTCCAAAGCGTATACCATCTTCTTTTCAAAAGGAGGGTAGACCAAACT
GCTAGACACAAGTCATGGCGCGATGGTCGAATACAGTGGCGGCCTGCATGTAGCTGAAATCGTGGAGTTCGCTTAAAATCTCA