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Detailed information on CNT30143346


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Lolium perenneOryza sativa47.8661.8692.11279forward
CNT30670612Lolium perenneSetaria viridis35.3350.9992.72206forward
CNT30522472Lolium perenneSetaria italica48.251.1892.53281forward
CNT30286361Lolium perenneTriticum aestivum47.5150.6495.31277forward
CNT30387206Lolium perenneTriticum turgidum47.6849.8294.24278forward
CNT30563984Lolium perenneActinidia chinensis27.2776.4488.05159forward
CNT30553196Lolium perenneOryza glaberrima48.0350.1893.93280forward
CNT30441215Lolium perenneAegilops tauschii47.6850.1895.68278forward
CNT30253187Lolium perenneAvena sativa48.5452.996.82283forward
CNT3015042Lolium perenneZea mays47.5146.7993.86277forward
CNT30229571Lolium perenneAnanas comosus36.1951.2191211forward
CNT30685043Lolium perenneTriticum urartu45.4559.5593.21265forward
CNT30720165Lolium perenneTriticum spelta24.1930.0692.91141forward
CNT30596905Lolium perenneOryza meridionalis47.6845.7291.37278forward
CNT30577582Lolium perenneOryza barthii45.4541.6792.08265forward
CNT30117527Lolium perenneOryza nivara45.4546.0192.08265forward

Expression of CNT30143346

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MRPEMRLTPPRRARRRMAGLVMPWMLSRSTFRWRFAPPLPSPLPPLPRPDISGEACEVDDLCCVVVVGC

Sequence

>CNT30143346
TGGATGGATTGCATCGCAAACGATAGAATCAGCAGAACAGATTGCAGGGCAATTGAAGGATTAAACTAGTGAAATTCCCATTCCATTCTACCGAACCAGA
GGTTCAGCTCGACCTAATACATCCAACGGACACAGAGGACTACAGCAACAAACAACAGCCAGACAACAACGACTAACACCCAACAACAACGCGGCACGAA
CCCTAAAACATCTGCTAGCAACTTCTCTAATCTGGCGGAGCAGCAGCTCAGCCCCCGAAGCCGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACGA
CGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTGACGCC
GCCGCGGCGCGCCAGGCGGCGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCGGTGGCGCTTCGCGCCGCCCTTGCCCAGCCCC
TTGCCGCCCTTGCCGCGGCCCGACATCTCCGGCGAGGCTTGTGAGGTTGACGACTTGTGTTGTGTGGTGGTGGTTGGCTGCGG