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Detailed information on CNT30143344


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Lolium perenneOryza sativa62.6344.7299.071401forward
CNT30524653Lolium perenneSetaria italica33.3562.2798.79746reverse complement
CNT30548882Lolium perenneIpomoea triloba48.541.1697.881085reverse complement
CNT30378671Lolium perenneArabidopsis thaliana6.7553.5598.68151forward
CNT30632593Lolium perenneVigna unguiculata48.9564.8796.891095reverse complement
CNT30504983Lolium perenneNicotiana attenuata17.0320.9299.21381reverse complement
CNT30158473Lolium perennePistacia vera2.7327.9810061reverse complement
CNT30635645Lolium perenneCapsicum annuum22.0879.8191.9494reverse complement
CNT30221494Lolium perenneHordeum vulgare44.6680.4398.6999reverse complement
CNT30569653Lolium perenneActinidia chinensis14.1347.0996.84316forward
CNT30585815Lolium perenneMusa acuminata48.6444.8394.761088reverse complement
CNT30234810Lolium perenneBrassica oleracea25.2174.594.15564forward
CNT30553404Lolium perenneOryza glaberrima17.3927.5597.43389reverse complement
CNT30147394Lolium perenneMedicago truncatula46.2251.9198.071034reverse complement
CNT30440683Lolium perenneAegilops tauschii43.67101.1497.03977reverse complement
CNT30248040Lolium perenneAvena sativa34.8757.9598.97780forward
CNT30662061Lolium perenneTriticum dicoccoides86.77101.1597.371941forward
CNT3081478Lolium perenneBrassica juncea33.2164.1695.02743reverse complement
CNT3016633Lolium perenneZea mays86.68101.4796.491939forward
CNT30229838Lolium perenneAnanas comosus19.810098.42443forward
CNT30218527Lolium perenneKalanchoe fedtschenkoi33.4850.399.2749forward
CNT3067373Lolium perenneLeersia perrieri12.5292.7299.64280reverse complement
CNT30655299Lolium perenneRosa chinensis48.4638.297.881084reverse complement
CNT30203595Lolium perenneHelianthus annuus48.9559.7795.981095reverse complement
CNT30689128Lolium perenneTriticum urartu60.3972.6797.711351reverse complement
CNT30721611Lolium perenneTriticum spelta10.0148.5999.55224forward
CNT30366518Lolium perenneSorghum bicolor14.53100.3189.85325forward
CNT30595506Lolium perenneOryza meridionalis15.4231.36100345forward
CNT30369805Lolium perenneOryza glumipatula43.0967.2297.41964reverse complement
CNT30154718Lolium perennePrunus persica21.1968.493.67474reverse complement
CNT30420891Lolium perennePapaver somniferum26.3721.9792.71590forward
CNT30323793Lolium perenneAsparagus officinalis9.0764.2498.03203reverse complement
CNT30151602Lolium perenneBrachypodium distachyon16.5473.8595.41370forward
CNT30104648Lolium perenneOryza rufipogon20.9280.2798.93468forward
CNT30575706Lolium perenneOryza barthii42.9639.4397.5961reverse complement
CNT30582488Lolium perenneEchinochloa crusgalli54.1499.751001211reverse complement
CNT30495774Lolium perenneDigitaria exilis17.5799.24100393forward
CNT30116696Lolium perenneOryza nivara62.6335.3399.141401forward
CNT30604605Lolium perenneOryza punctata3.8437.2391.8686forward
CNT3040451Lolium perenneMarchantia polymorpha8.0930.8393.37181reverse complement

Expression of CNT30143344

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGDHWFDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 2 (50 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSAHFGGNFSLGACLSNTKRGFRSL*

>peptide 3 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPQRR*

>peptide 4 (87 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 5 (30 aa)
MLNTRNRSKTTSKGINSYCRKGKITPFLYI*

>peptide 6 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 7 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

Sequence

>CNT30143344
CTTCCGTTGAGGTCCTTAGTTTAGTCAAGTAGGCGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGAC
TTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGATCACCAAAGGCCTTTGTGGCACTAGTGGTACAAAGAAGTCATGGGTGATCATTGGTT
CGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGA
TTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCA
TTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCA
CGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTATTACCACTACGTACCACACCACCGGGCGGCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCA
ACTCGACGTCGTCGTAACCAAGCCTAACCAAACCTCCATGCGGTACTTTGACGTCACTATAGGTAGGTCTTGAGTTCGGCAAGACGACTTCGGTTCACAC
GTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCA
CTCGGCTCCTCGGCTCACTTCGGTGGCAATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATC
TCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCCGTTAAGGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAG
GTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCG
GAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGCT
CCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAA
TTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCC
TTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATC
GCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGC
TGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACC
AACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGT
TCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACAACT
TTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCA
AACTCAGATTTTGACTATGATTGGGCCGAACAGTGGTAGAACCTGGTGAACCGGGCCTACTACTAAACATTGATTCTCTCTCCTAACCACTCTTAAATAT
GTTAAATACACGGAATCGATCCAAAACTACAAGCAAGGGAATCAACTCTTATTGCCGTAAAGGAAAAATCACCCCTTTCCTTTATATATAGTCCGCCAAG
TAGCCTTCGCCACCTATTCCTGAATTAAGGGAACGCG