Detailed information on CNT30143320


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691328Lolium perenneOryza sativa69.1361.9492.81459forward
CNT30254145Lolium perenneAvena sativa73.1969.3394.44486forward
CNT30461506Lolium perenneSaccharum spontaneum70.0339.1191.18465forward
CNT30583697Lolium perenneEchinochloa crusgalli70.0325.2691.18465forward
CNT30116053Lolium perenneOryza nivara69.886694.4464forward

Expression of CNT30143320

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (29 aa)
LITGNFEVHLFIFERDCCTSNCSSRNQHK*

>peptide 3 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVKVFTKICI

Sequence

>CNT30143320
AATTGATCACAGGAAACTTCGAAGTTCATTTATTCATATTTGAACGGGACTGCTGTACCAGCAACTGTTCTTCACGAAACCAACACAAATAGGGGACTCG
ACGGTCCATTAAACCAGACACAGTACTTCAAACGAGACAGACACAATTTCAAGGGCGACAACAAGGCAGCCCACCAGAAGCAGCTCCAACACCAAGACAC
TTACTGACCACCGCGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCG
AAGATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGG
TCTTCCCAGTCAGGGTCTTAACGAAGATCTGCATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGT
CCTGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTG
TCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATCT