Detailed information on CNT30143316


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 4e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189410Lolium perenneSecale cereale54.1353.1593.22236forward
CNT30244044Lolium perenneAvena sativa59.1756.8394.57258forward

Expression of CNT30143316

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVKVFTKICI

>peptide 2 (29 aa)
LITGNFEVHLFIFERDCCTSNCSSRNQHK*

Sequence

>CNT30143316
AATTGATCACAGGAAACTTCGAAGTTCATTTATTCATATTTGAACGGGACTGCTGTACCAGCAACTGTTCTTCACGAAACCAACACAAATAGGGGACTCG
ACGGTCCATTAAACCAGACACAGTACTTCAAACGAGACAGACACAATTTCAAGGGCGACAACAAGGCAGCCCACCAGAAGCAGCTCCAACACCAAGACAC
TTACTGACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCA
AAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAG
TCTTGCCGGTCAAAGTCTTCACAAAGATCTGCATCT