Detailed information on CNT30143309


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693865Lolium perenneOryza sativa76.8572.9687.54923forward
CNT30595768Lolium perenneOryza meridionalis76.8567.1389.92923forward
CNT30149632Lolium perenneBrachypodium distachyon54.768.5191.48657forward

Expression of CNT30143309

Peptides detected in this lncRNA

>peptide 1 (46 aa)
GRNDHSQTKTINKIDSKMTDYSKVPLFITTNCCTSKLLSRNQHIGS*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRRTR*

>peptide 3 (39 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICRE*

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVLTKICMPPRRRRTR*

>peptide 5 (61 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT30143309
GGCAGAAACGACCATTCACAAACTAAAACAATAAATAAAATCGACAGTAAAATGACAGATTACTCCAAAGTTCCTTTATTCATTACCACGAACTGCTGTA
CCAGCAAACTGTTATCACGAAACCAACACATAGGGAGCTGATGGTCCATTAAACCAGGCACAATAGACTTGACACAAACGAGAGTACGGGACAGACACTT
CACTTGTAGGGCTACAAGGACAGCCCACCGGACAACACGAGACACTTACTGACCACCGCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATG
TTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCT
TCACGTTGTCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAGATCTGCATACCACCACGCAGGCGGAGCAC
CAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCCTCTAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGA
ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGGACTCCACCTCCAGGGTGATAGTCTTGCCGGTCAACGTCTTGACAAAGA
TCTGCATGCCACCCCGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCATCCTCCAGCTGCTTTCCCGC
GAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGGACTCGACCTCCAGGGTGATG
GTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCACCCCGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGG
TCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTAACATTGTCGATGGT
ATCTGAGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCAGAGAATAATAACCAAATAGAATGGTAAGCCTC
A