CANTATAdb - search

Detailed information on CNT30143304

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-129

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3067391	Lolium perenne	Leersia perrieri	67.38	31.24	88.27	665	forward

Expression of CNT30143304

Peptides detected in this lncRNA

>peptide 1 (50 aa)
WISEGRNDHSQTKTINKIDSKMTDYSKVPLFITTNCCTSKLLSRNQHIGS*

>peptide 2 (39 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICRE*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICIPPRRRRTR*

Sequence

>CNT30143304
TATGGATTTCAGAAGGCAGAAACGACCATTCACAAACTAAAACAATAAATAAAATCGACAGTAAAATGACAGATTACTCCAAAGTTCCTTTATTCATTAC
CACGAACTGCTGTACCAGCAAACTGTTATCACGAAACCAACACATAGGGAGCTGATGGTCCATTAAACCAGGCACAATAGACTTGACACAAACGAGAGTA
CGGGACAGACACTTCACTTGTAGGGCTACAAGGACAGCCCACCGGACAACACGAGACACTTACTGACCACCGCGAAGGCGGAGCACCAGGTGGAGAGTGG
ACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC
CTGGATCTTGGCCTTCACGTTGTCAATGGTATCAGAGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCACCA
CGCAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCT
GCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCAG
GGTCTTCACGAAGATCTGCATACCACCACGTAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCGTCCTCC
AGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTAACATTGTCGATGGTATCTGAGGACTCCA
CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCAGAGAATAATAACCAAATAGAATGGTAAGCCTCA