Detailed information on CNT30143197


BLAST search results

BLAST vs Swiss-Prot:
sp|P85413|RGP1_PHODC, E-value = 7e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678520Lolium perenneSetaria viridis39.0937.2589.81206forward
CNT30521866Lolium perenneSetaria italica41.5654.0790.41219forward
CNT30185816Lolium perenneSecale cereale16.722.3487.588forward
CNT30296517Lolium perenneTriticum aestivum16.731.3288.6488forward
CNT30223753Lolium perenneHordeum vulgare16.732.5988.6488forward
CNT30655253Lolium perenneRosa chinensis20.872681.82110forward
CNT30683620Lolium perenneTriticum urartu48.5850.5992.97256forward
CNT30575864Lolium perenneOryza barthii50.0939.490.53264forward

Expression of CNT30143197

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKTNPFSSYKRTTSITTDNYKSFFLSDLSLSKRTNSIYL*

>peptide 2 (39 aa)
IQEYYKQTKNTRVICYSTERTRYNNQQITQNYNYSSCIM*

Sequence

>CNT30143197
ATTCAGGAGTACTATAAACAGACAAAGAACACACGGGTGATTTGCTATTCAACAGAAAGAACTCGCTATAACAACCAACAAATTACGCAGAACTATAATT
ATTCGTCTTGTATAATGTAAATGAAAACAAATCCTTTTTCCAGCTACAAAAGAACCACCAGCATAACAACAGATAATTATAAAAGCTTCTTCCTCAGTGA
TCTCTCCTTGTCAAAAAGAACTAATAGTATATATCTATGAGGGCCGAGGCCTCAATCCAGGTGACCATGGCATCAGCAAGCTTGACGAAGTAGGGGTCAA
TCTTGCCAAGCTTCTCCCTGACCTGCTCGGAGAGCGAGATGTAGCACTTCTGGACTGTGTCACATTCCTTGGAGAGGGTGGCGCTCTGGAAGAACGGGAT
GATGTCCTCCTGCCAGAAGATGCCCTTGTACTCCTTCTTGAGGTTGACGAAGGGGTTGCTGGCCTTGCTGTGCCACAGGTAAGGCAGGCCAGTCTTGACT
CCCAGGCTCAAGTGGTCGCAGATGACC