Detailed information on CNT30142779


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-119

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522168Lolium perenneSetaria italica60.261.3184.83534forward
CNT30223925Lolium perenneHordeum vulgare33.3754.5189.53296forward
CNT30440221Lolium perenneAegilops tauschii21.0860.1390.37187forward
CNT30877Lolium perenneZea mays63.0265.6983.72559forward
CNT30685647Lolium perenneTriticum urartu55.4766.3188.41492forward
CNT30579738Lolium perenneEchinochloa crusgalli63.1347.8685.18560forward

Expression of CNT30142779

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPLPVTMACTKKPNMENMARRPFLSSLTLSSAAVSGSSARPSGSKEPPG*

>peptide 2 (36 aa)
MIVQIITQSTCSYTLIHDVQVHMHISPGGRTDGYLI*

>peptide 3 (29 aa)
MIVPLLTFIHRRTLCLITLRTTSETGLAQ*

>peptide 4 (54 aa)
AQACINILRVLTSEITFLPSSNDPDLTTLFIIDDCSIIDIHSSAYLVLNYIAHN*

>peptide 5 (46 aa)
MPFLDRISGNTHPSAPSIAHLEWITSSSLFLANVSGSADNPAVSHP*

Sequence

>CNT30142779
GAGCCCAAGCATGTATAAATATTCTCCGTGTGCTAACCTCTGAGATCACGTTTCTTCCTTCTAGCAACGATCCGGACTTAACTACTCTCTTCATTATAGA
TGATTGTTCCATTATTGACATTCATTCATCGGCGTACCTTGTGCTTAATTACATTGCGCACAACTAGCGAGACGGGACTCGCTCAATGATAGTACAAATA
ATAACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGCCCGGTGGTCGGACGGATGGCTATCTCATTTAACTTC
CAGGAGCGAAGTTGGTGGCGAAAGCCCATGCGTTGTTGTTGACTGGGTCAGCAACGTGGTCGAAGAGGTTTTCGATGGGTCCCTTGCCGGTGACGATGGC
CTGTACAAAGAAACCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTGACCTTGAGCTCGGCAGCGGTGTCGGGATCGTCGGCAAGGCCA
AGTGGGTCAAAGGAGCCGCCTGGGTAGATCTTGTCGAGGATGCTTTGTGCGTGCACCAGATTAGGGTTGCCGAGGTAGTCGAGACCGCCCTCAGAGAAGA
TCTGAGCGCCGGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTCTTGGACAGGATCTCTGGGAACACACACCCGAGTGCGCCAAGCATCGCCCA
CCTCGAGTGGATCACCTCTAGCTCCCTATTCTTGGCGAACGTCTCTGGGTCAGCTGACAACCCTGCGGTGTCCCACCCGTAGTCACCGGGAAACTCGCCG
GTCAAGTAAGATGGGGTCTGCTCCGAGAATGGACCCAGGTACTTGGGACGGTCAGGACCGTACCTATATATTCATTCATCACCATGC