Detailed information on CNT3014272


BLAST search results

BLAST vs Swiss-Prot:
sp|P12653|GSTF1_MAIZE, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522744Zea maysSetaria italica54.7917.2987200forward
CNT30293056Zea maysTriticum aestivum21.126.184.4277forward
CNT30681876Zea maysTriticum urartu41.6415.5782.89152forward
CNT30363251Zea maysSorghum bicolor56.9917.8593.27208forward
CNT30369272Zea maysOryza glumipatula25.2114.5684.7892forward
CNT30497720Zea maysDigitaria exilis51.5130.4784.57188forward

Expression of CNT3014272

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MVLIHNFLVGGSPKHRTDEDLEEDGIQCSGVLVSLHLDPNIHHCCLLEVSFPQQLWLVFASSVLADCS*

>peptide 2 (48 aa)
SMLTHRHSTFVIEDTSLNKQTTQNRLGLFHSPIDRATVSSRWLHQGRE*

>peptide 3 (79 aa)
MASSGQRVTDTWFSSTTFWSVVPPSIGLMRTWKRMGFSAAVYWLASTSIQTSTIAASSRFPSLNSSGLFLRAAYLQIARD

Sequence

>CNT3014272
AAGCATGCTCACACATAGGCACTCAACTTTCGTCATAGAAGACACATCACTGAACAAGCAAACAACCCAGAACAGACTTGGCTTATTCCATTCACCGATT
GACAGGGCAACCGTTTCAAGCAGATGGCTTCATCAGGGCAGAGAGTGACAGACACATGGTTCTCATCCACAACTTTCTGGTCGGTGGTTCCCCCAAGCAT
AGGACTGATGAGGACCTGGAAGAGGATGGGATTCAGTGCAGCGGTGTACTGGTTAGCCTCCACCTCGATCCAAACATCCACCATTGCTGCCTCCTCGAGG
TTTCCTTCCCTCAACAGCTCTGGCTTGTTTTTGCGAGCAGCGTACTTGCAGATTGCTCGTGATTC